Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0875
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AL032637-15|CAA21616.2|  370|Caenorhabditis elegans Hypothetical...    28   5.9  
AF016427-3|AAB65356.1|  730|Caenorhabditis elegans Yeast mcm (li...    28   7.9  

>Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical
           protein T23F1.5 protein.
          Length = 1262

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 26/91 (28%), Positives = 36/91 (39%)
 Frame = -3

Query: 380 PTLKTFISLAAA*PGSLRTSATPDTFIR*TSESTDPPPVVANFTWQVTST*MYFSTAFPR 201
           PT +T IS     P +  TS   ++           PP + + T    S      T  P 
Sbjct: 615 PTAQT-ISTRFTAPTTTTTSKPVESTTTEEDTPEHVPPAIVHMTASTPSG-KNPPTYIPL 672

Query: 200 VPGTSTYSVFSST*GRSARKTLASPKRPPFP 108
            P TS  +   +T  RS R T +  +RP FP
Sbjct: 673 HPETSQSTPTPTTSARSTRPTASVTRRPEFP 703


>AL032637-15|CAA21616.2|  370|Caenorhabditis elegans Hypothetical
           protein Y43F8C.16 protein.
          Length = 370

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = -3

Query: 341 PGSLRTSATPDTFIR*TSESTDPPPVVANFTWQVTST*MYFSTAFPRVPGTSTYSV 174
           P +  ++ TP      T+E++  P + +N T  +TST    +++  R   T+T SV
Sbjct: 301 PSTTTSTTTPKPSSPSTAEASTTPVLTSNLTSALTSTSPLLASSTERTATTATSSV 356


>AF016427-3|AAB65356.1|  730|Caenorhabditis elegans Yeast mcm
           (licensing factor) relatedprotein 7 protein.
          Length = 730

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +1

Query: 211 AVEKYIHVDVTCHVKLATTGGGSVDSEVHLMKVSGV--ALVRKDPGQAAARLMKVFN 375
           A E + HVDV   + +A  GG   D+  + MK+ G    L+  DPG A ++L+   N
Sbjct: 350 APEIFGHVDVKKCLLMALVGGN--DNSSNGMKIRGCINVLMMGDPGVAKSQLLGYVN 404


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,867,041
Number of Sequences: 27780
Number of extensions: 397138
Number of successful extensions: 885
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)