Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0872
         (791 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   3.3  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   9.9  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/49 (20%), Positives = 20/49 (40%)
 Frame = +1

Query: 43  DIVLYKINEYKYGFPFIVRTSEIEYPEPGQQNFAYISAIYVKDHYTDGN 189
           ++ L +++   YG      T  + Y  P  +N  Y++   +      GN
Sbjct: 242 NLTLKEVDNKVYGMALSPVTHNLYYNSPSSENLYYVNTESLMKSENQGN 290


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 10  HDLSLGQLTYRDIVLYKINEYKYGFPFIVRT 102
           ++L LG   +RD V   + ++K G P  + T
Sbjct: 186 NNLPLGLEVWRDKVFITLPKWKDGIPVTLTT 216


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,765
Number of Sequences: 438
Number of extensions: 4271
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)