Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0871
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce...    28   0.46 
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           25   3.3  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    24   7.6  
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ...    24   10.0 
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    24   10.0 

>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 604

 Score = 28.3 bits (60), Expect = 0.46
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 164 YAIENVKKLAHRSTVPIRCSKILPTSNITTR 72
           Y I  V+ L+HR+   +RC  I+PT  +T +
Sbjct: 190 YVIPIVQCLSHRTVPRLRCVVIVPTRELTVQ 220


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 155 ENVKKLAHRSTVPIRCSKILPTSNITTRKNISISFRQS 42
           E VK L + S +P+  ++ILP        + S+ F +S
Sbjct: 648 EAVKSLINLSDIPLSIAEILPADESLRYSSSSVPFYES 685


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 112 LIGTVDLCASFLTFSIA*KLTQI 180
           ++GT  +  SFLTF++  KLT +
Sbjct: 489 MLGTCIVSVSFLTFTVYAKLTNL 511


>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 55  LIEIFFLVVMLLVGNIFEHLIGTVDLCASFLTFSIA 162
           LI  F   +   +G  + ++  + +LCAS +TF  A
Sbjct: 417 LISFFTPFITNSIGFKYGYIFASCNLCASIVTFLFA 452


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -1

Query: 139 SHTDQLYRSGAQRYYLRVTSRLGKISQSALDSLVNSTD*NEDYNN 5
           S ++  Y  G QRY   +   L  I   +LDSL +S++ +  +NN
Sbjct: 358 SRSETCYNDG-QRYD-ELRRELADIQNESLDSLNSSSNNSPSHNN 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,063,868
Number of Sequences: 5004
Number of extensions: 17210
Number of successful extensions: 50
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)