Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0871
         (400 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0008 - 50576-50671,50767-50829,50918-50961,51048-51129,522...    27   4.1  
03_01_0267 + 2070547-2070938,2072737-2072940,2073080-2073121,207...    26   9.5  

>02_01_0008 -
           50576-50671,50767-50829,50918-50961,51048-51129,
           52205-52371,52502-52654,52780-52960,53452-53540,
           53599-53799,54804-55147,55397-55626
          Length = 549

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +1

Query: 67  FFLVVMLLVGNIFEHLIGTVDLCASFLTFSIA*KLTQICIFKCNF 201
           FF +VM LVG++   L+  +  CA FL   +  K+T   I  C+F
Sbjct: 481 FFGLVMALVGSLLTMLVTYILPCACFLAI-LKRKVTWHQIAACSF 524


>03_01_0267 +
           2070547-2070938,2072737-2072940,2073080-2073121,
           2073807-2073810
          Length = 213

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
 Frame = -3

Query: 266 ARQDDSAAVSLYRYVTTDYMQKKLHLKIQI*VNFYAIE---NVKKLAHRSTVP---IRCS 105
           AR+  +AA +  R        ++   ++++      ++   +  + + R T P   IR S
Sbjct: 86  ARRASAAAAAAVRMPAAPQAAEEFEAEVEVSFGDNVLDLDGDAMERSTRETTPCSLIRSS 145

Query: 104 KILPTSNITTRKNISISFRQSRE 36
           +++ T   TT+ N SIS R+  E
Sbjct: 146 EMISTPGSTTKTNTSISSRRRME 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,186,038
Number of Sequences: 37544
Number of extensions: 89773
Number of successful extensions: 202
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)