Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0871
         (400 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ991915-1|ABJ09588.1| 2176|Drosophila melanogaster eyes shut pr...    37   0.009
DQ780942-1|ABH07112.1| 2165|Drosophila melanogaster spacemaker p...    37   0.009
AE014134-390|AAZ83988.1| 1984|Drosophila melanogaster CG33955-PB...    37   0.009

>DQ991915-1|ABJ09588.1| 2176|Drosophila melanogaster eyes shut
            protein.
          Length = 2176

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = -1

Query: 313  LSVDARLNATGNAPASHDKMTLLPYLYIG 227
            LSVD + N TG +P S  +M +LP LY+G
Sbjct: 1464 LSVDGKFNITGRSPGSGSRMDVLPILYLG 1492


>DQ780942-1|ABH07112.1| 2165|Drosophila melanogaster spacemaker
            protein.
          Length = 2165

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = -1

Query: 313  LSVDARLNATGNAPASHDKMTLLPYLYIG 227
            LSVD + N TG +P S  +M +LP LY+G
Sbjct: 1453 LSVDGKFNITGRSPGSGSRMDVLPILYLG 1481


>AE014134-390|AAZ83988.1| 1984|Drosophila melanogaster CG33955-PB
            protein.
          Length = 1984

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = -1

Query: 313  LSVDARLNATGNAPASHDKMTLLPYLYIG 227
            LSVD + N TG +P S  +M +LP LY+G
Sbjct: 1272 LSVDGKFNITGRSPGSGSRMDVLPILYLG 1300


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,881,947
Number of Sequences: 53049
Number of extensions: 170262
Number of successful extensions: 506
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1149697725
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)