Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0870
(610 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 283 1e-76
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 279 9e-76
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 279 2e-75
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078 29 2.9
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 5.0
06_03_1011 - 26882011-26882157,26882576-26884248,26884607-268847... 28 6.7
08_02_1359 + 26382605-26382815,26382907-26382998,26383722-263837... 27 8.8
02_05_0672 + 30775458-30775523,30775594-30775662,30775748-307757... 27 8.8
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 283 bits (693), Expect = 1e-76
Identities = 127/185 (68%), Positives = 152/185 (82%)
Frame = +2
Query: 2 LNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIK 181
LNAP H MLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV+ I+ QR +
Sbjct: 28 LNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREVISILMQRHVM 87
Query: 182 VDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 361
VDGKVRTD TYPAGFMDVVSI KT E FRL+YD KGRF +H I E+AK+KLCKV+ V
Sbjct: 88 VDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKFKLCKVRSVQF 147
Query: 362 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGR 541
G K +P+L T+DGRTIRYPDPLIK ND+I++D+ T KI+DFIKF+ GN+ M+TGGRN GR
Sbjct: 148 GQKGIPFLNTNDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNIVMVTGGRNTGR 207
Query: 542 VGTIR 556
VG I+
Sbjct: 208 VGVIK 212
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 279 bits (685), Expect = 9e-76
Identities = 124/185 (67%), Positives = 152/185 (82%)
Frame = +2
Query: 2 LNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIK 181
LNAPKH MLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+ QR +
Sbjct: 12 LNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVL 71
Query: 182 VDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 361
VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V
Sbjct: 72 VDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQF 131
Query: 362 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGR 541
G K +PYL T+DGRTIRYPDPLIK ND+I++D+ T KI+DFIKF+ GN+ M+TGGRN GR
Sbjct: 132 GQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGR 191
Query: 542 VGTIR 556
VG I+
Sbjct: 192 VGVIK 196
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 279 bits (683), Expect = 2e-75
Identities = 123/185 (66%), Positives = 152/185 (82%)
Frame = +2
Query: 2 LNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIK 181
LNAPKH MLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+ QR +
Sbjct: 12 LNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVL 71
Query: 182 VDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 361
VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V
Sbjct: 72 VDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQF 131
Query: 362 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGR 541
G K +PYL T+DGRTIRYPDP+IK ND+I++D+ T KI+DFIKF+ GN+ M+TGGRN GR
Sbjct: 132 GQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGR 191
Query: 542 VGTIR 556
VG I+
Sbjct: 192 VGVIK 196
>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
Length = 574
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -3
Query: 113 SGKSPGASTRATCGDRLTVSVH 48
+G+SPG + RA GD L V+VH
Sbjct: 50 NGESPGPTIRAAQGDTLVVTVH 71
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 263 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 367
+ LIYD++G + + P++A L ++ V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>06_03_1011 -
26882011-26882157,26882576-26884248,26884607-26884783,
26885313-26885416,26885896-26886032
Length = 745
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = +2
Query: 389 THDGRTIRYPDPLIKVNDSI-QLDIA---TTKIMDFIKFESGNLCMITG 523
+HD + + PDPL ND I ++ IA T ++D+ + + C + G
Sbjct: 599 SHDDKVVSEPDPLPVHNDKIDEVTIAAIQTCALVDYQQSQQNKPCSVNG 647
>08_02_1359 +
26382605-26382815,26382907-26382998,26383722-26383791,
26383895-26384013,26384580-26384676,26384781-26384860,
26384986-26385180,26385460-26385520,26386408-26386468,
26386900-26386993,26387085-26387157,26387158-26387270,
26387444-26387587
Length = 469
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 158 FSGLRFRSKHTSDDSSGKSPGASTRATCG 72
FSGLR S+ S S SP A++ CG
Sbjct: 9 FSGLRLDSRRLSSSSLPTSPSAASSNGCG 37
>02_05_0672 + 30775458-30775523,30775594-30775662,30775748-30775797,
30775869-30775929,30776016-30776381,30776542-30776754,
30776826-30777056,30777502-30777615,30777703-30778495,
30778535-30778905,30779007-30779378,30779448-30780438,
30781068-30781141,30781953-30782030,30782448-30782525
Length = 1308
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -1
Query: 232 IHKSSRISRVSPNFPINLYEALFHNFQDFVSG 137
+H+SS ++R++P F + Y L H + ++ G
Sbjct: 1024 LHRSSSVARIAPEFVV--YSELLHTKRSYMHG 1053
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,280,698
Number of Sequences: 37544
Number of extensions: 394781
Number of successful extensions: 1087
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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