Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0870
         (610 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011369-1|AAR96161.1|  261|Drosophila melanogaster RE57333p pro...   319   2e-87
AE014296-2240|AAF49846.1|  261|Drosophila melanogaster CG11276-P...   319   2e-87
AE014296-2239|AAF49847.1|  261|Drosophila melanogaster CG11276-P...   319   2e-87
D16257-1|BAA03786.1|  261|Drosophila melanogaster ribosomal prot...   313   1e-85
AF114160-1|AAD26161.2| 2077|Drosophila melanogaster adherin Nipp...    29   6.6  
AE013599-26|EAA46003.3| 2077|Drosophila melanogaster CG17704-PF,...    29   6.6  
AE013599-25|EAA46004.3| 2077|Drosophila melanogaster CG17704-PE,...    29   6.6  
BT021421-1|AAX33569.1| 1098|Drosophila melanogaster LD02690p pro...    28   8.7  
AY051840-1|AAK93264.1|  561|Drosophila melanogaster LD34444p pro...    28   8.7  
AE013599-2039|AAF58149.3| 1098|Drosophila melanogaster CG8155-PA...    28   8.7  

>BT011369-1|AAR96161.1|  261|Drosophila melanogaster RE57333p
           protein.
          Length = 261

 Score =  319 bits (783), Expect = 2e-87
 Identities = 149/189 (78%), Positives = 166/189 (87%)
 Frame = +2

Query: 2   LNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIK 181
           L APK  MLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G EV KIV QRL+K
Sbjct: 12  LAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVK 71

Query: 182 VDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 361
           VDGKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+   
Sbjct: 72  VDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQL 131

Query: 362 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGR 541
           G K VP+LVTHDGRTIRYPDPLI  NDS+Q+DIA+ KI D+IKF+SGNLCMITGGRNLGR
Sbjct: 132 GAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGR 191

Query: 542 VGTIRVPRE 568
           VGT+ V RE
Sbjct: 192 VGTV-VNRE 199



 Score = 33.5 bits (73), Expect = 0.23
 Identities = 14/17 (82%), Positives = 14/17 (82%)
 Frame = +3

Query: 555 VXRERHAGXFDIVHIKD 605
           V RERH G FDIVHIKD
Sbjct: 196 VNRERHPGSFDIVHIKD 212


>AE014296-2240|AAF49846.1|  261|Drosophila melanogaster CG11276-PB,
           isoform B protein.
          Length = 261

 Score =  319 bits (783), Expect = 2e-87
 Identities = 149/189 (78%), Positives = 166/189 (87%)
 Frame = +2

Query: 2   LNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIK 181
           L APK  MLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G EV KIV QRL+K
Sbjct: 12  LAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVK 71

Query: 182 VDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 361
           VDGKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+   
Sbjct: 72  VDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQL 131

Query: 362 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGR 541
           G K VP+LVTHDGRTIRYPDPLI  NDS+Q+DIA+ KI D+IKF+SGNLCMITGGRNLGR
Sbjct: 132 GAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGR 191

Query: 542 VGTIRVPRE 568
           VGT+ V RE
Sbjct: 192 VGTV-VNRE 199



 Score = 33.5 bits (73), Expect = 0.23
 Identities = 14/17 (82%), Positives = 14/17 (82%)
 Frame = +3

Query: 555 VXRERHAGXFDIVHIKD 605
           V RERH G FDIVHIKD
Sbjct: 196 VNRERHPGSFDIVHIKD 212


>AE014296-2239|AAF49847.1|  261|Drosophila melanogaster CG11276-PA,
           isoform A protein.
          Length = 261

 Score =  319 bits (783), Expect = 2e-87
 Identities = 149/189 (78%), Positives = 166/189 (87%)
 Frame = +2

Query: 2   LNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIK 181
           L APK  MLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G EV KIV QRL+K
Sbjct: 12  LAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVK 71

Query: 182 VDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 361
           VDGKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+   
Sbjct: 72  VDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQL 131

Query: 362 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGR 541
           G K VP+LVTHDGRTIRYPDPLI  NDS+Q+DIA+ KI D+IKF+SGNLCMITGGRNLGR
Sbjct: 132 GAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGR 191

Query: 542 VGTIRVPRE 568
           VGT+ V RE
Sbjct: 192 VGTV-VNRE 199



 Score = 33.5 bits (73), Expect = 0.23
 Identities = 14/17 (82%), Positives = 14/17 (82%)
 Frame = +3

Query: 555 VXRERHAGXFDIVHIKD 605
           V RERH G FDIVHIKD
Sbjct: 196 VNRERHPGSFDIVHIKD 212


>D16257-1|BAA03786.1|  261|Drosophila melanogaster ribosomal protein
           S4 protein.
          Length = 261

 Score =  313 bits (769), Expect = 1e-85
 Identities = 147/189 (77%), Positives = 164/189 (86%)
 Frame = +2

Query: 2   LNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIK 181
           L APK  MLDKLGGV+APRPSTGPHKLRE LPL+ FLRNRLKYAL G EV KIV QRL+K
Sbjct: 12  LAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLTFLRNRLKYALNGAEVTKIVMQRLVK 71

Query: 182 VDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 361
           V GKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+   
Sbjct: 72  VYGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQL 131

Query: 362 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGR 541
           G K VP+LVTHDGRTIRYPDPLI  NDS+Q+DIA+ KI D+IKF+SGNLCMITGGRNLGR
Sbjct: 132 GAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGR 191

Query: 542 VGTIRVPRE 568
           VGT+ V RE
Sbjct: 192 VGTV-VNRE 199



 Score = 33.5 bits (73), Expect = 0.23
 Identities = 14/17 (82%), Positives = 14/17 (82%)
 Frame = +3

Query: 555 VXRERHAGXFDIVHIKD 605
           V RERH G FDIVHIKD
Sbjct: 196 VNRERHPGSFDIVHIKD 212


>AF114160-1|AAD26161.2| 2077|Drosophila melanogaster adherin Nipped-B
            protein.
          Length = 2077

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = -1

Query: 406  GAAIMRY-QVRNILRSGRH-TLDFTQLVLSLLRGDTVDCESALNIID*TKQFISL 248
            G  ++RY   + I +S R  +LD+  +V + LR DTV+    +NIID   Q I L
Sbjct: 888  GTMLVRYVSDKGIEQSIRLVSLDYLGIVAARLRKDTVESRCRVNIIDSMIQSIKL 942


>AE013599-26|EAA46003.3| 2077|Drosophila melanogaster CG17704-PF,
            isoform F protein.
          Length = 2077

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = -1

Query: 406  GAAIMRY-QVRNILRSGRH-TLDFTQLVLSLLRGDTVDCESALNIID*TKQFISL 248
            G  ++RY   + I +S R  +LD+  +V + LR DTV+    +NIID   Q I L
Sbjct: 888  GTMLVRYVSDKGIEQSIRLVSLDYLGIVAARLRKDTVESRCRVNIIDSMIQSIKL 942


>AE013599-25|EAA46004.3| 2077|Drosophila melanogaster CG17704-PE,
            isoform E protein.
          Length = 2077

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = -1

Query: 406  GAAIMRY-QVRNILRSGRH-TLDFTQLVLSLLRGDTVDCESALNIID*TKQFISL 248
            G  ++RY   + I +S R  +LD+  +V + LR DTV+    +NIID   Q I L
Sbjct: 888  GTMLVRYVSDKGIEQSIRLVSLDYLGIVAARLRKDTVESRCRVNIIDSMIQSIKL 942


>BT021421-1|AAX33569.1| 1098|Drosophila melanogaster LD02690p
           protein.
          Length = 1098

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 64  NRSPQVARVLAPGDFPEESSEVCFDRKRSPENCETTPHK 180
           NR+ ++ + L+ G+  E+     FDRK SP   ET P K
Sbjct: 575 NRNVKLEQNLSAGEETEDDD--VFDRKESPSFLETNPFK 611


>AY051840-1|AAK93264.1|  561|Drosophila melanogaster LD34444p
           protein.
          Length = 561

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 64  NRSPQVARVLAPGDFPEESSEVCFDRKRSPENCETTPHK 180
           NR+ ++ + L+ G+  E+     FDRK SP   ET P K
Sbjct: 38  NRNVKLEQNLSAGEETEDDD--VFDRKESPSFLETNPFK 74


>AE013599-2039|AAF58149.3| 1098|Drosophila melanogaster CG8155-PA
           protein.
          Length = 1098

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 64  NRSPQVARVLAPGDFPEESSEVCFDRKRSPENCETTPHK 180
           NR+ ++ + L+ G+  E+     FDRK SP   ET P K
Sbjct: 575 NRNVKLEQNLSAGEETEDDD--VFDRKESPSFLETNPFK 611


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,256,580
Number of Sequences: 53049
Number of extensions: 661768
Number of successful extensions: 1806
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1805
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2503659279
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)