Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0870
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   256   1e-68
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z98877-16|CAH60800.1|  975|Caenorhabditis elegans Hypothetical p...    28   4.5  
Z98877-15|CAB63407.3|  572|Caenorhabditis elegans Hypothetical p...    28   4.5  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    28   4.5  
AL031633-10|CAA21024.1|  387|Caenorhabditis elegans Hypothetical...    28   6.0  
AF025464-2|AAN84804.1|  496|Caenorhabditis elegans Prion-like-(q...    27   7.9  
AF025464-1|AAN84805.1|  529|Caenorhabditis elegans Prion-like-(q...    27   7.9  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  256 bits (626), Expect = 1e-68
 Identities = 120/184 (65%), Positives = 142/184 (77%)
 Frame = +2

Query: 2   LNAPKHGMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIK 181
           L AP H MLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  KI+ QR+++
Sbjct: 11  LAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRVVR 70

Query: 182 VDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 361
           VDGKVRT   +P GFMDVV+IE+TNE FR++YD KGR+ +HRI   EA +KLCKVK V T
Sbjct: 71  VDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRT 130

Query: 362 GPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGR 541
             K VP L T DGRTIRYPDP +KVND+I  +I+T KI D +KFE GNL  +TGGRN+GR
Sbjct: 131 VNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRNVGR 190

Query: 542 VGTI 553
           VG I
Sbjct: 191 VGII 194


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +2

Query: 287 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 418
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>Z98877-16|CAH60800.1|  975|Caenorhabditis elegans Hypothetical
           protein Y69H2.10b protein.
          Length = 975

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 75  WGPVDGLGAYTPPSLSNXPCLGAF 4
           +GP+ GLG +T P+L   P  G F
Sbjct: 75  FGPIPGLGNFTLPTLGTLPGFGNF 98


>Z98877-15|CAB63407.3|  572|Caenorhabditis elegans Hypothetical
           protein Y69H2.10a protein.
          Length = 572

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 75  WGPVDGLGAYTPPSLSNXPCLGAF 4
           +GP+ GLG +T P+L   P  G F
Sbjct: 75  FGPIPGLGNFTLPTLGTLPGFGNF 98


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
            family protein 5 protein.
          Length = 938

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -2

Query: 444  ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 280
            E  ++ +  G   V P C   Y     PVA  +  H  Y A + ++R   N P T
Sbjct: 868  EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921


>AL031633-10|CAA21024.1|  387|Caenorhabditis elegans Hypothetical
           protein Y39A1A.13 protein.
          Length = 387

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 473 IMDFIKFESGNLCMITGGRNLGRVGTIR 556
           + DF++ + G   ++ G RN GR  T+R
Sbjct: 39  VYDFLQSKDGKCALLEGERNCGRESTLR 66


>AF025464-2|AAN84804.1|  496|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
           isoform a protein.
          Length = 496

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -1

Query: 235 NIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQ 98
           N H++S+     PN+  N Y+     FQ     Q  + + PQ+ +Q
Sbjct: 210 NYHQNSQNPYQQPNYQQNQYQPQLQQFQQNPRQQQHVYSNPQQGYQ 255


>AF025464-1|AAN84805.1|  529|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
           isoform b protein.
          Length = 529

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -1

Query: 235 NIHKSSRISRVSPNFPINLYEALFHNFQDFVSGQSILQTIPQENHQ 98
           N H++S+     PN+  N Y+     FQ     Q  + + PQ+ +Q
Sbjct: 232 NYHQNSQNPYQQPNYQQNQYQPQLQQFQQNPRQQQHVYSNPQQGYQ 277


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,028,398
Number of Sequences: 27780
Number of extensions: 320871
Number of successful extensions: 852
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)