Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0870
         (610 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    28   0.082
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   2.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.1  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   4.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   7.1  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   9.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.4  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 27.9 bits (59), Expect = 0.082
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -1

Query: 325 SLLRGDTVDCESALNIID*TKQFISLLN*DNIHKSSRIS 209
           SLL+ +TV C+ A++++      + +++ DNIH    IS
Sbjct: 381 SLLKENTVTCQEAMHMLKNADSQLLVISDDNIHIKGVIS 419


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 367 RSGRHTLDFTQLVLSLLRGDTVDCESALNIID*TKQFISL 248
           R G+  +  T L+ ++L    + CE  +NI    K ++SL
Sbjct: 75  RYGQSAVGLTFLLGAILVQVAIICEGVMNIQKDNKSYLSL 114


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 119 RLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 220
           R K+ LTG   L   K RL+  +      P +P+
Sbjct: 182 RTKHRLTGETRLSATKGRLVITEPVGSVRPKFPS 215


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +2

Query: 446 IQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIRVPRE 568
           +  D+ T ++ + +K   G L + T G N  +V +++VP +
Sbjct: 121 VDRDVPTWEV-NILKSIVGQLQVDTQGENAVKVNSVQVPTD 160


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 129 YFRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLS 28
           Y R  +R  T  +H ++    +DG+G Y   S S
Sbjct: 83  YNRMDMRNATYYQHQQDHGSGMDGMGGYRSASPS 116


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -3

Query: 419 LGSGWCGHHALPSTEHS*VRSPH 351
           +G G    HA P   HS   +PH
Sbjct: 419 MGHGHSHIHATPHHHHSHAATPH 441


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +2

Query: 161 VKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYD 280
           VKQ ++ V+    TDP Y     + +  E ++ + ++ Y+
Sbjct: 145 VKQLIVGVNKMDMTDPPYSEARFEEIKKEVSSYIKKIGYN 184


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 416 PDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLG 538
           PD L  +     LD+   +I +F      NL  +TG R +G
Sbjct: 447 PDALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIG 487


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,225
Number of Sequences: 438
Number of extensions: 3739
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)