Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0868
(600 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2... 175 5e-45
SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa... 164 1e-41
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 28 0.91
SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces pombe... 27 2.1
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 26 3.7
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 26 3.7
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr... 26 4.8
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 25 8.5
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 25 8.5
>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 439
Score = 175 bits (425), Expect = 5e-45
Identities = 84/139 (60%), Positives = 106/139 (76%)
Frame = +3
Query: 90 MVIKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGK 269
M I+ + ARQI+DSRGNPTVEVDL TE G+ RA VPSGASTG+ EALE+RD K+++ GK
Sbjct: 1 MAIQKVFARQIYDSRGNPTVEVDLTTETGIHRAIVPSGASTGIWEALEMRDGDKTKWGGK 60
Query: 270 GVLTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAILGVSLXXXX 449
GVL A+ N+N +IAP + KANL+VT Q+ DE +LKLDGTENKSKLGANAILGVS+
Sbjct: 61 GVLKAVGNVNNIIAPAVVKANLDVTDQKAADEFLLKLDGTENKSKLGANAILGVSMAICR 120
Query: 450 XXXXXXNVPLYKHLADLAG 506
+PL+K++A+ G
Sbjct: 121 AGAAQKKLPLWKYIAENFG 139
Score = 38.3 bits (85), Expect = 8e-04
Identities = 15/17 (88%), Positives = 17/17 (100%)
Frame = +1
Query: 520 VLPVPAFNVINGGSHAG 570
VLPVP+FNV+NGGSHAG
Sbjct: 145 VLPVPSFNVLNGGSHAG 161
>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 440
Score = 164 bits (398), Expect = 1e-41
Identities = 77/138 (55%), Positives = 103/138 (74%)
Frame = +3
Query: 96 IKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGV 275
I+ I +R I+DSRGNPTVEV+L TELG FR+ VPSGASTG EA ELRDN K+++ GKGV
Sbjct: 4 IQKIYSRSIYDSRGNPTVEVELTTELGTFRSMVPSGASTGEWEAKELRDNDKNKWGGKGV 63
Query: 276 LTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAILGVSLXXXXXX 455
A+ N+N +I P L K+++++T QR IDE M+KLDGT +KSKLGAN+I+GVS+
Sbjct: 64 TIAVHNVNNIIGPALVKSDIKITDQRGIDEFMIKLDGTNDKSKLGANSIVGVSMAVARAA 123
Query: 456 XXXXNVPLYKHLADLAGN 509
+PLY+++ LAG+
Sbjct: 124 AAFLKIPLYEYIGKLAGS 141
Score = 33.9 bits (74), Expect = 0.018
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +1
Query: 523 LPVPAFNVINGGSHAG 570
+PVP+FNV+NGG HAG
Sbjct: 147 IPVPSFNVLNGGRHAG 162
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 28.3 bits (60), Expect = 0.91
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = +3
Query: 126 DSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINEL 305
D +G +VD ++A +ST LE R N + E V TAI + E
Sbjct: 140 DEKGPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEKRYNDELELDD-AVHTAILALKET 198
Query: 306 IAPELTKANLEV 341
ELT+ N+E+
Sbjct: 199 FEGELTEDNIEI 210
>SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 396
Score = 27.1 bits (57), Expect = 2.1
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Frame = +3
Query: 63 LRKSSSVLKMVIKSIKARQIFDSRGNPTV-EVDLVTELGLFRAAVPSGASTGVHEALELR 239
++ +V+K I SIK ++ + +G TV + D+ + G A G T + +
Sbjct: 171 MKGEMAVMKNDIASIKG-EMAEMKGEMTVMKNDIASIKG--EMAEMKGEMTIMKSDI--- 224
Query: 240 DNIKSEY-HGKGVLTAIKNINELIAPELTKANLEVTQQRE-IDELMLKLDGTENKSK 404
D++K E KG +T +KN + + E T EVT ++ I +L K+D + +++
Sbjct: 225 DSVKGEMAEMKGEMTIMKNDIDSVKGETTTLKGEVTAMKDSISQLDRKIDLLDQRTE 281
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 26.2 bits (55), Expect = 3.7
Identities = 22/98 (22%), Positives = 42/98 (42%)
Frame = +3
Query: 72 SSSVLKMVIKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIK 251
+S V VI++ + G P + ++ LG F + S S + ++ + +
Sbjct: 1088 TSEVTLSVIRARPGLLVKMVDGEPILTQQVIQNLGGFSSEEVSMVSRCIRSRTQIMNMLA 1147
Query: 252 SEYHGKGVLTAIKNINELIAPELTKANLEVTQQREIDE 365
+E H + K +NE +A L + N E T E+ +
Sbjct: 1148 TEIHYAASVGQNKYLNEYVA-SLIRTN-EKTHSTELSQ 1183
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -2
Query: 398 FVLSAIQLKHEFINLSLLGYFKVGFG 321
F +S+I+ KH++IN+ Y +G G
Sbjct: 113 FSISSIKTKHDYINIIKKHYVSLGVG 138
>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 527
Score = 25.8 bits (54), Expect = 4.8
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +2
Query: 434 PSCC*GWCCQEK 469
PSCC G CC+E+
Sbjct: 490 PSCCGGHCCKEE 501
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -2
Query: 326 FGKFRSNEFIDIFDCGQNSLAMIFTLDV-ISQFKSFMNTSGGTRGYSCPEQAKL 168
F + +EF +IF+C ++LA++ +S + +N +G + C AK+
Sbjct: 657 FVEILESEFPNIFECLVDNLALLHIFQFWMSNEVTSVNCTGIVLSFCCDNLAKI 710
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 25.0 bits (52), Expect = 8.5
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = +3
Query: 195 PSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINEL--IAPELTKANLEVTQQREIDEL 368
P A+ +H+ E +N+KSE+ KG + A K +E + + KA E + I ++
Sbjct: 429 PILANIYLHQLDEFIENLKSEFDYKGPI-ARKRTSESRHLHYLMAKAKRENADSKTIRKI 487
Query: 369 MLKLDGTENK 398
+++ NK
Sbjct: 488 AIEMRNVPNK 497
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,268,269
Number of Sequences: 5004
Number of extensions: 39858
Number of successful extensions: 107
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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