Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0868
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0117 - 12486672-12486818,12487438-12487488,12487583-124877... 168 3e-42
10_02_0022 - 4290708-4290788,4291254-4291305,4291396-4291484,429... 145 2e-35
06_01_0262 - 1930552-1930632,1931096-1931152,1931236-1931287,193... 138 3e-33
03_02_0365 - 7816966-7817046,7817441-7817492,7817590-7817678,781... 132 2e-31
03_02_0477 - 8770905-8770985,8771164-8771361,8771939-8772025,877... 89 3e-18
07_03_0627 - 20061951-20062391,20062912-20062960,20063386-200638... 29 2.8
01_01_0796 + 6190931-6192745 29 3.8
11_01_0660 + 5382460-5382764,5383854-5384348,5384454-5384541,538... 27 8.7
>09_03_0117 -
12486672-12486818,12487438-12487488,12487583-12487729,
12488037-12488354,12488450-12488604,12488941-12489248,
12490644-12491038
Length = 506
Score = 168 bits (409), Expect = 3e-42
Identities = 86/143 (60%), Positives = 107/143 (74%), Gaps = 1/143 (0%)
Frame = +3
Query: 93 VIKSIKARQIFDSRGNPTVEVDLVTELG-LFRAAVPSGASTGVHEALELRDNIKSEYHGK 269
V++SI+ARQI DSRGNPTVEVDLV G L R+AVPSGASTG++EALELRD + Y GK
Sbjct: 50 VVRSIRARQIVDSRGNPTVEVDLVAGDGRLHRSAVPSGASTGIYEALELRDGDGAAYGGK 109
Query: 270 GVLTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAILGVSLXXXX 449
GVL A++NINE+IAP+L ++V Q ++D +ML +DGT NKSKLGANAILGVSL
Sbjct: 110 GVLNAVRNINEVIAPKL--VGVDVRNQSDVDAIMLDIDGTPNKSKLGANAILGVSLSVCR 167
Query: 450 XXXXXXNVPLYKHLADLAGNNDI 518
VPLYKH+ +LAG ++
Sbjct: 168 AGAGAKEVPLYKHIQELAGTKEL 190
Score = 41.1 bits (92), Expect = 7e-04
Identities = 17/18 (94%), Positives = 18/18 (100%)
Frame = +1
Query: 517 LVLPVPAFNVINGGSHAG 570
LV+PVPAFNVINGGSHAG
Sbjct: 190 LVMPVPAFNVINGGSHAG 207
>10_02_0022 -
4290708-4290788,4291254-4291305,4291396-4291484,
4291565-4291615,4291699-4291893,4292010-4292090,
4292190-4292252,4292480-4292554,4292630-4292710,
4292784-4292888,4292977-4293057,4293156-4293242,
4293322-4293369,4293923-4293987,4294109-4294172,
4294828-4294896
Length = 428
Score = 145 bits (352), Expect = 2e-35
Identities = 84/148 (56%), Positives = 101/148 (68%), Gaps = 7/148 (4%)
Frame = +3
Query: 96 IKSIKARQIFDSRGNPTVEVDLVTELGLF-RAAVPSGASTGVHEALELRDNIKSEYHGKG 272
I S+KARQIFDSRGNPTVEVD+ G F RAAVPSGASTGV+EALELRD S+Y GKG
Sbjct: 5 IVSVKARQIFDSRGNPTVEVDVCCSDGTFARAAVPSGASTGVYEALELRDG-GSDYLGKG 63
Query: 273 VLTAIKNINELIAPELTKANLEVTQQREIDELML-KLDGTEN-----KSKLGANAILGVS 434
V A+ N+N +IAP L + T Q E+D M+ +LDGT+N K KLGANAIL VS
Sbjct: 64 VSKAVDNVNSVIAPAL--IGKDPTSQAELDNFMVQQLDGTKNEWGWCKQKLGANAILAVS 121
Query: 435 LXXXXXXXXXXNVPLYKHLADLAGNNDI 518
L +PLY+H+A+LAGN +
Sbjct: 122 LAICKAGAIIKKIPLYQHIANLAGNKQL 149
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/18 (100%), Positives = 18/18 (100%)
Frame = +1
Query: 517 LVLPVPAFNVINGGSHAG 570
LVLPVPAFNVINGGSHAG
Sbjct: 149 LVLPVPAFNVINGGSHAG 166
>06_01_0262 -
1930552-1930632,1931096-1931152,1931236-1931287,
1931373-1931461,1931551-1931601,1931696-1931890,
1932015-1932095,1932205-1932267,1933045-1933119,
1933194-1933352,1933353-1933463,1933536-1933616,
1933721-1933807,1933920-1933967,1934357-1934421,
1935002-1935065,1935220-1935288
Length = 475
Score = 138 bits (334), Expect = 3e-33
Identities = 82/155 (52%), Positives = 103/155 (66%), Gaps = 10/155 (6%)
Frame = +3
Query: 84 LKMVIKSIKARQIFDSRGNPTVEVDLVTELGLF-RAAVPSGASTGVHEALELRDNIKSEY 260
+ + I+S+KARQIFDSRGNPTVEVD+ G F R AVPSGASTG++EALELRD S+Y
Sbjct: 1 MAVTIQSVKARQIFDSRGNPTVEVDVGLSDGSFARGAVPSGASTGIYEALELRDG-GSDY 59
Query: 261 HGKGVLTAIKNINELIAPELTKANLEVTQQREIDELML-KLDGTEN-----KSKLGANAI 422
GKGVL A+ N+N +I P L + T+Q +ID M+ +LDGT N K KLGANAI
Sbjct: 60 LGKGVLKAVSNVNTIIGPAL--IGKDPTEQVDIDNFMVQQLDGTSNNWGWCKQKLGANAI 117
Query: 423 LGVSLXXXXXXXXXXNVPLY---KHLADLAGNNDI 518
L VSL +PLY +H+A+LAGN +
Sbjct: 118 LAVSLAVCKAGAMVKKIPLYQKLQHIANLAGNKTL 152
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/18 (100%), Positives = 18/18 (100%)
Frame = +1
Query: 517 LVLPVPAFNVINGGSHAG 570
LVLPVPAFNVINGGSHAG
Sbjct: 152 LVLPVPAFNVINGGSHAG 169
>03_02_0365 -
7816966-7817046,7817441-7817492,7817590-7817678,
7817762-7817854,7817900-7818094,7818172-7818249,
7818353-7818415,7818806-7818880,7818958-7819038,
7819329-7819409,7819516-7819602,7819682-7819729,
7820317-7820381,7820566-7820629,7821254-7821322
Length = 406
Score = 132 bits (319), Expect = 2e-31
Identities = 78/137 (56%), Positives = 93/137 (67%), Gaps = 7/137 (5%)
Frame = +3
Query: 96 IKSIKARQIFDSRGNPTVEVDLVTELGLF-RAAVPSGASTGVHEALELRDNIKSEYHGKG 272
I+S+KARQIFDSRGNPTVEVD+ G F RAAVPSGASTGV+EALELRD S+Y GKG
Sbjct: 5 IQSVKARQIFDSRGNPTVEVDICCSDGTFARAAVPSGASTGVYEALELRDG-GSDYLGKG 63
Query: 273 VLTAIKNINELIAPELTKANLEVTQQREIDELML-KLDGTEN-----KSKLGANAILGVS 434
VL A+ N+N +I P L + T+Q ID M+ +LDGT+N K KLGANAIL VS
Sbjct: 64 VLKAVDNVNSIIGPAL--IGKDPTEQTVIDNFMVQQLDGTKNEWGWCKQKLGANAILAVS 121
Query: 435 LXXXXXXXXXXNVPLYK 485
L +PLY+
Sbjct: 122 LALCKAGAIIKKIPLYQ 138
>03_02_0477 -
8770905-8770985,8771164-8771361,8771939-8772025,
8772094-8772179,8772270-8772368,8772431-8772551,
8773251-8773331,8773643-8773723,8773972-8774088,
8774185-8774256,8774621-8775055
Length = 485
Score = 88.6 bits (210), Expect = 3e-18
Identities = 48/140 (34%), Positives = 78/140 (55%)
Frame = +3
Query: 93 VIKSIKARQIFDSRGNPTVEVDLVTELGLFRAAVPSGASTGVHEALELRDNIKSEYHGKG 272
VI S++ARQI D RG P VEV L T + RA+ + + A +RD K + +
Sbjct: 46 VITSVRARQILDGRGEPAVEVSLHTNKAVHRASAAAADAPEGAAADAVRDAEKRKLLARA 105
Query: 273 VLTAIKNINELIAPELTKANLEVTQQREIDELMLKLDGTENKSKLGANAILGVSLXXXXX 452
V A++ IN+ ++ L ++ QQ +ID+ ++ LD +K+++G N++L VS+
Sbjct: 106 VADAVRVINDKVSEALV--GMDPQQQSQIDQAIMDLDKAHHKAEIGVNSMLAVSIAACKA 163
Query: 453 XXXXXNVPLYKHLADLAGNN 512
VPLYKH+A+L G +
Sbjct: 164 GAAEKEVPLYKHIAELVGKS 183
Score = 32.3 bits (70), Expect = 0.31
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +1
Query: 523 LPVPAFNVINGGSHAG 570
LP+PA VINGG+HAG
Sbjct: 187 LPIPAITVINGGTHAG 202
>07_03_0627 - 20061951-20062391,20062912-20062960,20063386-20063851,
20063933-20064139,20064267-20064405,20065146-20065282,
20065414-20065657,20065808-20065969,20066049-20066167,
20066240-20066314,20066327-20066500,20066607-20066769,
20067211-20067420,20067515-20067668,20067761-20067839,
20067999-20068146,20068501-20068671,20068771-20069385
Length = 1250
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 174 GLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINELIAPE 317
GL +A + SGA + A+E D+ YHG V +++N +IA +
Sbjct: 1124 GLVKAFMDSGAKAVISSAMEPPDSQSIVYHGMEVNGSLENGKFVIADD 1171
>01_01_0796 + 6190931-6192745
Length = 604
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/75 (22%), Positives = 36/75 (48%)
Frame = +3
Query: 174 GLFRAAVPSGASTGVHEALELRDNIKSEYHGKGVLTAIKNINELIAPELTKANLEVTQQR 353
GLF+ A TG A+ + D +S++H G T ++ ++ ++ +A E
Sbjct: 29 GLFKCASDLSILTGASVAVVIEDQNRSKFHAVGTPTVQAVVDAALSSDVEEAAAEARPVA 88
Query: 354 EIDELMLKLDGTENK 398
+ ++LM ++ E +
Sbjct: 89 D-EQLMERIAPLERE 102
>11_01_0660 +
5382460-5382764,5383854-5384348,5384454-5384541,
5384629-5384691,5384965-5385125,5385214-5385289,
5385395-5385454,5385555-5385662,5385746-5385982,
5386192-5386307,5386756-5386813
Length = 588
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +3
Query: 237 RDNIKSEYHGKGVL--TAIKNINELIAPELTKANLEV 341
RD + + GKG + T+ ++++ L P+LT NL+V
Sbjct: 518 RDTFPTSFDGKGAMVQTSNRSLSPLRDPDLTMRNLQV 554
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,857,771
Number of Sequences: 37544
Number of extensions: 261026
Number of successful extensions: 647
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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