Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0866
(650 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75955-1|CAB00111.2| 796|Caenorhabditis elegans Hypothetical pr... 34 0.076
AF328908-1|AAK01123.1| 796|Caenorhabditis elegans voltage-gated... 34 0.076
AF319616-1|AAG49526.1| 796|Caenorhabditis elegans CLC-type chlo... 34 0.076
Z68270-5|CAA92570.1| 174|Caenorhabditis elegans Hypothetical pr... 32 0.41
Z82059-4|CAB04877.1| 314|Caenorhabditis elegans Hypothetical pr... 31 0.71
Z81519-2|CAB04217.1| 468|Caenorhabditis elegans Hypothetical pr... 30 1.2
AL117195-3|CAB55009.1| 629|Caenorhabditis elegans Hypothetical ... 30 1.6
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 29 2.9
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 29 2.9
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 29 2.9
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 29 2.9
U42848-7|AAA83612.2| 567|Caenorhabditis elegans Hypothetical pr... 27 8.7
>Z75955-1|CAB00111.2| 796|Caenorhabditis elegans Hypothetical
protein R07B7.1 protein.
Length = 796
Score = 34.3 bits (75), Expect = 0.076
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Frame = +2
Query: 320 KLTVTFKFGEISRDGSVQILATDYN--NYAIAYNCKYDD--KKKSHQVFVWILSRNK 478
+L + + ++ R S + L+ Y NY I+ N Y D KK SHQ+ +W +SRN+
Sbjct: 46 ELLFSRQLDDVGRTDSHEALSARYESLNYEISENRLYRDAEKKPSHQLTLWRISRNR 102
>AF328908-1|AAK01123.1| 796|Caenorhabditis elegans voltage-gated
chloride channelCLH-6 protein.
Length = 796
Score = 34.3 bits (75), Expect = 0.076
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Frame = +2
Query: 320 KLTVTFKFGEISRDGSVQILATDYN--NYAIAYNCKYDD--KKKSHQVFVWILSRNK 478
+L + + ++ R S + L+ Y NY I+ N Y D KK SHQ+ +W +SRN+
Sbjct: 46 ELLFSRQLDDVGRTDSHEALSARYESLNYEISENRLYRDAEKKPSHQLTLWRISRNR 102
>AF319616-1|AAG49526.1| 796|Caenorhabditis elegans CLC-type
chloride channel CLH-6 protein.
Length = 796
Score = 34.3 bits (75), Expect = 0.076
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Frame = +2
Query: 320 KLTVTFKFGEISRDGSVQILATDYN--NYAIAYNCKYDD--KKKSHQVFVWILSRNK 478
+L + + ++ R S + L+ Y NY I+ N Y D KK SHQ+ +W +SRN+
Sbjct: 46 ELLFSRQLDDVGRTDSHEALSARYESLNYEISENRLYRDAEKKPSHQLTLWRISRNR 102
>Z68270-5|CAA92570.1| 174|Caenorhabditis elegans Hypothetical
protein ZC410.5a protein.
Length = 174
Score = 31.9 bits (69), Expect = 0.41
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +2
Query: 137 QGIWYEISKFPNESEKNGK--CSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTDDAN 310
QG+ ++ F + +N K S+ + +LE +V +VK+ ++ G+K+ ++G L +DA
Sbjct: 36 QGVTSDVGNFFSNQFQNAKDLFSNDQNELEKNVQRVKD--LLTGLKEKVKGLEPLANDAQ 93
Query: 311 KAAKLTVTFKFGEIS 355
K V E+S
Sbjct: 94 KETLKKVDGFLAEVS 108
>Z82059-4|CAB04877.1| 314|Caenorhabditis elegans Hypothetical
protein T27E9.8 protein.
Length = 314
Score = 31.1 bits (67), Expect = 0.71
Identities = 15/44 (34%), Positives = 29/44 (65%), Gaps = 4/44 (9%)
Frame = +1
Query: 517 HQGA-LQRDRLFETCAYRFFXGSLQI---YQLQRDNRTRKTLTL 636
HQ A + R R+F C YR++ ++++ + +QR++ T+ T+TL
Sbjct: 255 HQIAPINRKRVFVPCVYRWYDKNIEVKGGFDIQRNDGTQATVTL 298
>Z81519-2|CAB04217.1| 468|Caenorhabditis elegans Hypothetical
protein F29C12.5 protein.
Length = 468
Score = 30.3 bits (65), Expect = 1.2
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Frame = +2
Query: 155 ISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDG-VKKYIEGTAKL-TDDANKAAKLT 328
+S P +S KN S+ E+ VVK +N HI+ + + E KL D +A K
Sbjct: 129 MSGLPKKSPKNFDESNKEFSDGIVVVKHQNFHILKKFLAFHCEYLEKLFFGDFKEAGKAE 188
Query: 329 VTFKFGEISRDGSVQILATDYNNYAI 406
VT K IS +LA Y +YAI
Sbjct: 189 VTLK--AISSTDFHYLLAVLYEDYAI 212
>AL117195-3|CAB55009.1| 629|Caenorhabditis elegans Hypothetical
protein Y57A10A.4 protein.
Length = 629
Score = 29.9 bits (64), Expect = 1.6
Identities = 27/90 (30%), Positives = 40/90 (44%)
Frame = +2
Query: 329 VTFKFGEISRDGSVQILATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAKTAX 508
V +F E DG + Y +YA +N + K + I R + + G A
Sbjct: 31 VLTEFSESENDG-----LSHYAHYAKFHNYLVPNMAKLAEYS--IEERVRVIFGFAAVVS 83
Query: 509 DNFIKEHSKEIDSSKLVHTDFSQEACKFTS 598
D+F+K+ +E LVH D + CKFTS
Sbjct: 84 DDFLKQIQRE----GLVHLDKKKRICKFTS 109
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 86 GTCPELKPVNNFNLTAYQGIWYEIS-KFPNESEKNGKCSSAEYKLE 220
G L P N NL + + +S + PN++ + KCS+ YKLE
Sbjct: 2421 GCAAPLSPPTNLNLASPSNVQVRVSWQAPNQN--SWKCSAIRYKLE 2464
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 86 GTCPELKPVNNFNLTAYQGIWYEIS-KFPNESEKNGKCSSAEYKLE 220
G L P N NL + + +S + PN++ + KCS+ YKLE
Sbjct: 2421 GCAAPLSPPTNLNLASPSNVQVRVSWQAPNQN--SWKCSAIRYKLE 2464
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 86 GTCPELKPVNNFNLTAYQGIWYEIS-KFPNESEKNGKCSSAEYKLE 220
G L P N NL + + +S + PN++ + KCS+ YKLE
Sbjct: 2421 GCAAPLSPPTNLNLASPSNVQVRVSWQAPNQN--SWKCSAIRYKLE 2464
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 86 GTCPELKPVNNFNLTAYQGIWYEIS-KFPNESEKNGKCSSAEYKLE 220
G L P N NL + + +S + PN++ + KCS+ YKLE
Sbjct: 2421 GCAAPLSPPTNLNLASPSNVQVRVSWQAPNQN--SWKCSAIRYKLE 2464
>U42848-7|AAA83612.2| 567|Caenorhabditis elegans Hypothetical
protein C31H1.8 protein.
Length = 567
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 431 KKKSHQVFVWILSRNKKLEGDAKTAXDNFIKEHSK 535
K S V+ + SRN+KLE + A D+F++ SK
Sbjct: 240 KMHSDYVYAIVHSRNEKLERRLRGAIDSFMEIESK 274
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,893,387
Number of Sequences: 27780
Number of extensions: 245390
Number of successful extensions: 758
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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