Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0861
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 30 0.33
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 28 1.3
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.3
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 27 3.1
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 26 4.1
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 4.1
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 25 7.2
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At... 25 9.5
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 25 9.5
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 29.9 bits (64), Expect = 0.33
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +1
Query: 16 LSKVVIIQYSCYSLHYF*TITRNFIYS 96
L++ +I+ YS S+H T+TR FIYS
Sbjct: 529 LNRRLILHYSFESVHQLKTLTRKFIYS 555
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +2
Query: 155 FGSAENRRSPF-SIFDTNPRILT 220
+G N +SPF IF TNPRIL+
Sbjct: 180 YGFQGNEKSPFIKIFTTNPRILS 202
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 27.1 bits (57), Expect = 2.3
Identities = 20/65 (30%), Positives = 33/65 (50%)
Frame = -3
Query: 639 SASGRSYNRSYVSTIAAISGLVLVQRISTRVSSSVPIPSMQRCSSWHRYSSGGVIRATIT 460
S+SG SY+++Y S + L + ++ +P+P +R S Y+SG V AT
Sbjct: 158 SSSG-SYSQTYQSNANYTASSPLP---TASANAPLPVPPPRRVSQNSSYASGSVPAATAA 213
Query: 459 SSK*P 445
S+ P
Sbjct: 214 STASP 218
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +2
Query: 38 NIVVIHYTISKQ*REILYTALIKINCFFYNSHTVSP 145
N+ +HY K+ L LI NCF YNSH P
Sbjct: 352 NLKNLHYNSKKEFVHDLM--LIWSNCFLYNSHPDHP 385
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 26.2 bits (55), Expect = 4.1
Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Frame = +2
Query: 359 SNMQRQAISQAFT-REYGRDLIEDLKSELGGHFEDVIVALMTPPE--EYLCQELHRCMEG 529
+N++ Q + Q T ++ + + + +G FE+ I L E + L LH +
Sbjct: 753 TNLEDQLVDQTVTINKFAFERDQFRERSMG--FENTIKDLTRKMEATDMLNVSLHESLRS 810
Query: 530 MGTDEDTLVEILCTRTKPEIA---AIVDTYERLYDRPLAEH 643
+ T+ LV + K E+ AI+D +YD+ A+H
Sbjct: 811 VQTENSELVTEMAL-LKAELVKKQAIIDANANIYDKLTADH 850
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.2 bits (55), Expect = 4.1
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Frame = -3
Query: 639 SASGRSYNRSYV---STIAAISGLVLVQRISTRVSSSVPIPSMQRCSSWHRYSSGGVIRA 469
S+S +Y+ S + ST+ + S ++V SSS PIPS S + S + +
Sbjct: 660 SSSLSTYSSSVIPSSSTLVSSSSSLIVSSSPVASSSSSPIPSSSSLVSTYSASLSNITHS 719
Query: 468 TITSSK*PPNSDFRSSMRS 412
+++ + +S +S+ S
Sbjct: 720 SLSLTAMSSSSAIPTSVNS 738
Score = 25.4 bits (53), Expect = 7.2
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = -3
Query: 639 SASGRSYNRSYVSTIAAISGLVLVQRIS-TRVSSSVPIPSMQRCSSWHRYSSGGVIRATI 463
S+S + S VST +A + +S T +SSS IP+ S+ SS + ++I
Sbjct: 695 SSSPIPSSSSLVSTYSASLSNITHSSLSLTAMSSSSAIPTSVNSSTLITASSSNTLLSSI 754
Query: 462 TSS 454
TSS
Sbjct: 755 TSS 757
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 560 ILCTRTKPEIAAIVDTYERLYD 625
+ CTR + E A VD YE+L D
Sbjct: 2156 LYCTRVQKERFASVDEYEKLKD 2177
>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Frame = +2
Query: 155 FGSAENRRSPFSIFDT---NPRILTEMAYQRAPTVVGVPNFNAVEDAAA 292
F S SP S FD +P++ R P+ + F+ + DAA+
Sbjct: 348 FKSPSLSASPGSNFDNMSISPKVAVNRYIHRGPSATSLNKFSMISDAAS 396
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -2
Query: 559 LNEGVFIRAHTLHATVQLLAQVLLRGSHQSHD 464
+NE V R H L ++ +A ++ SH+S+D
Sbjct: 3 INEHVRERYHFLRVSLTRVAHLVFANSHESND 34
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,741,106
Number of Sequences: 5004
Number of extensions: 56886
Number of successful extensions: 148
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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