Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0861
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    25   0.84 
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           25   0.84 
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    24   1.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.9  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +1

Query: 115 FFLQQSYSVTKLEIWIR*KPPITFLYF*YKSSHLNRNGLSESSN 246
           FF+       +++  +  + P+ F Y+ YK +H     +S +SN
Sbjct: 416 FFITDGEKAARMQAKVN-RQPVWFYYYTYKGAHSISEIMSGTSN 458


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +1

Query: 115 FFLQQSYSVTKLEIWIR*KPPITFLYF*YKSSHLNRNGLSESSN 246
           FF+       +++  +  + P+ F Y+ YK +H     +S +SN
Sbjct: 416 FFITDGEKAARMQAKVN-RQPVWFYYYTYKGAHSISEIMSGTSN 458


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -2

Query: 352 SQYINDRLLVCTKAFHGGPQ 293
           S Y N   L CT  F GGPQ
Sbjct: 6   SMYNNVSPLQCTSPFLGGPQ 25


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = -3

Query: 387 CDMACRCMLDLVVNISMIACSSV 319
           C   C+C  D   N + + CS +
Sbjct: 761 CPAGCKCYNDRTWNTNAVDCSGL 783


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,647
Number of Sequences: 438
Number of extensions: 4288
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)