Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0860
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   4.0  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   5.3  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   5.3  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   5.3  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    22   7.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.1  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   7.1  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   7.1  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   9.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.3  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 607 ARVFQSLIVLSREPDTI*RLSTEKATESTSSD 512
           A + Q+L  L R PDT+ +++  + T   + D
Sbjct: 886 ANLTQTLDKLIRSPDTLRKIAQNRGTNPLAPD 917


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +1

Query: 148 ILSSSRDKTLIV---WKLTRDENNYGIPQKRLYGHSHFISDVVLSSDGNYAFF 297
           I+SS  +KT+     +K   + NNY    K+LY + ++I  + +     Y  F
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQIPIPVPVYYGNF 133


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +1

Query: 148 ILSSSRDKTLIV---WKLTRDENNYGIPQKRLYGHSHFISDVVLSSDGNYAFF 297
           I+SS  +KT+     +K   + NNY    K+LY + ++I  + +     Y  F
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQIPIPVPVYYGNF 133


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +1

Query: 148 ILSSSRDKTLIV---WKLTRDENNYGIPQKRLYGHSHFISDVVLSSDGNYAFF 297
           I+SS  +KT+     +K   + NNY    K+LY + ++I  + +     Y  F
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQIPIPVPVYYGNF 133


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 5/21 (23%), Positives = 17/21 (80%)
 Frame = -2

Query: 569 TRHYLTVVN*EGYREYILRLL 507
           +++Y+T+++  G+R++I  ++
Sbjct: 10  SKYYVTIIDAPGHRDFIKNMI 30


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/39 (23%), Positives = 15/39 (38%)
 Frame = +3

Query: 561  VSGSRDKTIKLWNTLAECKYTIQDDGHSDWGVMCXILTQ 677
            +SG+R  T  +W      +      G + W   C  L +
Sbjct: 897  LSGNRLVTFPVWQVTLNARLVELSLGSNPWSCRCKFLQE 935


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 5/21 (23%), Positives = 17/21 (80%)
 Frame = -2

Query: 569 TRHYLTVVN*EGYREYILRLL 507
           +++Y+T+++  G+R++I  ++
Sbjct: 26  SKYYVTIIDAPGHRDFIKNMI 46


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 5/21 (23%), Positives = 17/21 (80%)
 Frame = -2

Query: 569 TRHYLTVVN*EGYREYILRLL 507
           +++Y+T+++  G+R++I  ++
Sbjct: 83  SKYYVTIIDAPGHRDFIKNMI 103


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 5/20 (25%), Positives = 16/20 (80%)
 Frame = -2

Query: 566 RHYLTVVN*EGYREYILRLL 507
           ++Y+T+++  G+R++I  ++
Sbjct: 84  KYYVTIIDAPGHRDFIKNMI 103


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/42 (23%), Positives = 18/42 (42%)
 Frame = -2

Query: 521 ILRLLPHKHNLLPRKGTKHWSSASHRHLGLSSVHNQHLHPNK 396
           ++ + P    L+P   + H  S  +   G S   + H H +K
Sbjct: 368 MMMITPELLGLMPSGSSVHSDSGENNSRGHSGQSSSHHHGSK 409


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,869
Number of Sequences: 438
Number of extensions: 4594
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)