Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0859
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0678 + 27207340-27207447,27207555-27207668,27209111-272093... 137 1e-32
02_05_0144 + 26258841-26258948,26259099-26259212,26259335-262595... 133 1e-31
03_06_0282 - 32824950-32825135,32825247-32825505,32825651-328259... 104 9e-23
02_04_0656 - 24769069-24770814,24771552-24771608,24773307-247735... 31 1.3
07_03_1555 - 27669981-27670148,27670232-27670315,27670349-276703... 30 1.7
04_03_0634 - 18211054-18212169,18213449-18214219 30 1.7
03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598 30 1.7
12_01_0353 - 2695457-2696028,2696147-2696264 30 2.3
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 29 3.9
03_02_0328 - 7487759-7488340 29 3.9
06_03_0612 + 22735613-22735643,22735747-22735849,22737154-227375... 28 9.1
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355 28 9.1
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865... 28 9.1
03_06_0100 - 31647506-31647664,31647752-31647835,31647933-316480... 28 9.1
>04_04_0678 +
27207340-27207447,27207555-27207668,27209111-27209332,
27209407-27209481,27209569-27209685,27210145-27210395,
27210686-27210761,27210862-27210948,27211037-27211222
Length = 411
Score = 137 bits (331), Expect = 1e-32
Identities = 61/145 (42%), Positives = 94/145 (64%)
Frame = +1
Query: 118 TFIVQGFGNVGLHTCRYLVRAGATCIGVIEHDGSIYNPDGINPKALEDYRIENGTVVGFP 297
TF++QGFGNVG R + G I + + GSI N +G++ AL +R E G + F
Sbjct: 208 TFVIQGFGNVGSWAARIIHEKGGKVIALGDVTGSIRNKNGLDIPALMKHRNEGGALKDFH 267
Query: 298 GAKAYEGENMLYEKCDILVPAAIEQVINKDNAHRIQAKIIAEAANGPTTPAADKILIDRN 477
A+ + +L +CD+L+P A+ V+N++NA ++AK I EAAN PT P AD+IL +
Sbjct: 268 DAEVMDSSELLVHECDVLIPCALGGVLNRENAPDVKAKFIIEAANHPTDPEADEILAKKG 327
Query: 478 ILVIPDLYINAGGVTVSFFEWLKNL 552
+ ++PD+Y N+GGV VS+FEW++N+
Sbjct: 328 VTILPDIYANSGGVIVSYFEWVQNI 352
>02_05_0144 +
26258841-26258948,26259099-26259212,26259335-26259556,
26259660-26259734,26259827-26259943,26260046-26260296,
26260833-26260908,26261045-26261131,26261216-26261401
Length = 411
Score = 133 bits (322), Expect = 1e-31
Identities = 59/145 (40%), Positives = 94/145 (64%)
Frame = +1
Query: 118 TFIVQGFGNVGLHTCRYLVRAGATCIGVIEHDGSIYNPDGINPKALEDYRIENGTVVGFP 297
TF++QG GNVG + + + G + V + G+I N GI+ AL +R E G++ F
Sbjct: 208 TFVIQGLGNVGSWAAKLIHQKGGKIVAVGDVTGAIRNKSGIDIPALLKHRSEGGSLEDFY 267
Query: 298 GAKAYEGENMLYEKCDILVPAAIEQVINKDNAHRIQAKIIAEAANGPTTPAADKILIDRN 477
GA+ + +L +CD+LVP A+ V+N++NA ++A+ I E AN PT AD+IL +
Sbjct: 268 GAEVMDAAELLVHECDVLVPCALGGVLNRENAAEVKARFIIEGANHPTDTEADEILAKKG 327
Query: 478 ILVIPDLYINAGGVTVSFFEWLKNL 552
++V+PD+Y N+GGV VS+FEW++N+
Sbjct: 328 VIVLPDIYANSGGVVVSYFEWVQNI 352
>03_06_0282 -
32824950-32825135,32825247-32825505,32825651-32825901,
32826309-32826425,32826613-32826687,32826788-32827009,
32827396-32827509,32827694-32827801
Length = 443
Score = 104 bits (249), Expect = 9e-23
Identities = 49/113 (43%), Positives = 72/113 (63%)
Frame = +1
Query: 121 FIVQGFGNVGLHTCRYLVRAGATCIGVIEHDGSIYNPDGINPKALEDYRIENGTVVGFPG 300
F++QGFGNVG + + AG I + + G++ N +G++ L + EN + GF G
Sbjct: 209 FVIQGFGNVGSWAAQLISEAGGKVIAISDVTGAVKNSNGLDIAKLMKHSSENRGIKGFDG 268
Query: 301 AKAYEGENMLYEKCDILVPAAIEQVINKDNAHRIQAKIIAEAANGPTTPAADK 459
A + ++L E+CD+L+PAA+ VINKDNA+ I+AK I EAAN PT P AD+
Sbjct: 269 GDAIDPRSLLTEECDVLIPAALGGVINKDNANEIKAKYIIEAANHPTDPEADE 321
>02_04_0656 -
24769069-24770814,24771552-24771608,24773307-24773582,
24773675-24773965
Length = 789
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +1
Query: 163 RYLVRAGATCIGVIEHDGSIYNPDGINPKALEDYRIENGTVVGFPGAKA 309
R LV AGA +G DG +G+ +ALE++ ++ TVV P +++
Sbjct: 664 RVLVAAGAAEVGTHRSDGQRLRCEGLTEEALEEF-LDGVTVVRGPQSRS 711
>07_03_1555 - 27669981-27670148,27670232-27670315,27670349-27670360,
27670683-27670761,27670840-27671078,27671167-27671260,
27671342-27671484,27671688-27671786,27671870-27671998,
27672123-27672197,27672308-27672520,27672581-27672676,
27673282-27673380,27673600-27673839,27674212-27674322,
27674429-27674626,27674720-27674835,27675076-27675193,
27675761-27675866,27675972-27676030,27676259-27676388,
27676730-27676887,27677672-27677887,27677972-27678082,
27678313-27678472,27679364-27679509,27679603-27679695,
27680610-27680706,27681224-27681294,27681407-27681505,
27682037-27682168,27682287-27682729,27683252-27683564,
27684301-27684549
Length = 1631
Score = 30.3 bits (65), Expect = 1.7
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 2/111 (1%)
Frame = -1
Query: 366 DGGGYKNVALLVKHVLAFVGLSAGETDYRTVLDSVVLQGLRVDAIRVVNGAV--VLDNSD 193
DGG + +KH L ET L +++ GLR + V+G LD
Sbjct: 1160 DGGTGASPISSIKHAGGPWELGLSETHQLACLQTLIQNGLRERVVLRVDGGFRSGLDVLM 1219
Query: 192 ASGAGADEVAASVESHVTETLDDERXCHPNRGLYRSCXM*LASLMKXLPSR 40
A+ GADE + + R CH N +C + +AS + L +R
Sbjct: 1220 AAAMGADEYGFGSVAMIATGCVMARICHTN-----NCPVGVASQREELRAR 1265
>04_03_0634 - 18211054-18212169,18213449-18214219
Length = 628
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/29 (55%), Positives = 18/29 (62%)
Frame = +2
Query: 356 PPPSNRS*TRTTLTGSKLRSLRRPPTVPP 442
PP S RS TT T S +R+ RPPT PP
Sbjct: 14 PPSSPRSGATTTTTTS-VRARPRPPTAPP 41
>03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598
Length = 537
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +2
Query: 308 PTKARTCFTRSATFLYPPPSNRS*TRTTLTGSKLRSLRRPPTVPPHL 448
PT A T R+ PP S+ +R T S + PP PPHL
Sbjct: 484 PTFAATPVARAMALTAPPTSSPPGSRLRCTASARATSPPPPRHPPHL 530
>12_01_0353 - 2695457-2696028,2696147-2696264
Length = 229
Score = 29.9 bits (64), Expect = 2.3
Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 10/133 (7%)
Frame = +1
Query: 178 AGATCIGV----IEHDGSIYNPDGINPKALEDYRIENGTV-VGFPGAKAYEGENMLYEKC 342
AG +G+ I++ NP +P+A E + G++ VGF + GEN L+ K
Sbjct: 88 AGLNTLGISMARIDYAPKGQNPPHTHPRATEILSVIEGSLYVGFVTSNQANGENKLFTKT 147
Query: 343 ----DILV-PAAIEQVINKDNAHRIQAKIIAEAANGPTTPAADKILIDRNILVIPDLYIN 507
D+ V P + + + A I+A ++ P + N + D+
Sbjct: 148 LNKGDVFVFPEGLIHFQFNPSYDKPAAAIVALSSQNPGAITIANAVFGSNPPISDDVLAK 207
Query: 508 AGGVTVSFFEWLK 546
A V +WL+
Sbjct: 208 AFQVDKKAVDWLQ 220
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Frame = +3
Query: 333 REVRHSCTRRHRTGHKQGQRSQDPS*DHCGGRQRSHHTCCRQDPH---RSQHSRDPRPLH 503
R RH RHR GH G H R+ H + H R QHS + H
Sbjct: 534 RHHRHHHDHRHRHGHSHGDHHHHYHGGHHQRRRHHHPPAWDVEGHHHDRQQHSHEAGRNH 593
Query: 504 QR 509
R
Sbjct: 594 HR 595
>03_02_0328 - 7487759-7488340
Length = 193
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +2
Query: 332 TRSATFLYPPPSNRS*T--RTTLTGSKLRSLRRPPTVPP 442
T+ ATF YPPP + R + ++ R RR P+ PP
Sbjct: 51 TKYATFPYPPPPQQPPRSGRASTPSTRQRDRRRKPSRPP 89
>06_03_0612 +
22735613-22735643,22735747-22735849,22737154-22737511,
22737592-22738033,22738146-22738189,22738293-22738340
Length = 341
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1
Query: 642 PLERLLDRFQQMVVRFPLVFECQTSVRHVIEVLEPLEE 529
PL+R+ D + VVR L E + V+ +++V +E+
Sbjct: 165 PLDRMRDELKAYVVRHGLATELEEPVKDILQVYNIVED 202
>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
Length = 1109
Score = 27.9 bits (59), Expect = 9.1
Identities = 22/53 (41%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +3
Query: 339 VRHSCTRRHRTGHK-QGQRSQDPS*DHCGGRQRSHHTCCRQDPHRSQHSRDPR 494
VR R HR H Q QR H RQR HH RQ R +RDPR
Sbjct: 118 VRRWRPRDHRDQHDHQSQRHHHRHHHH--QRQRHHHHHQRQQ-RRGSRTRDPR 167
>04_04_1035 +
30283456-30283536,30284823-30285359,30285508-30286512,
30286718-30287042,30287563-30287818,30287901-30288117,
30288743-30289095,30289330-30289833,30291267-30292467,
30292614-30292970,30293258-30293495,30294083-30295125,
30295234-30296649,30296731-30296855,30297036-30297314,
30297352-30297382,30298957-30299022,30299447-30299689,
30299848-30299898,30299980-30300071,30300182-30300249,
30300515-30300600,30300720-30300824,30300994-30301127,
30302403-30302436,30302620-30302892,30303019-30303288,
30303384-30303974,30304065-30304214
Length = 3376
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +1
Query: 169 LVRAGATCIGVIEH-DGSIYNPDGINPKALEDYRIENGTVVGFPGAKAYEGENMLYEKCD 345
L RA +C+ ++E + S+ P G + +++Y + N T++ + +Y +M D
Sbjct: 473 LNRAKLSCLQLLEDLERSLDLPTGRDRNWIQNYCMRNATLIFCTSSSSYRLHHMEIAPLD 532
Query: 346 ILVPAAIEQV 375
+L+ QV
Sbjct: 533 VLIVDEAAQV 542
>03_06_0100 -
31647506-31647664,31647752-31647835,31647933-31648089,
31648181-31648446,31648524-31648796,31648874-31648985,
31649112-31649331,31649476-31649899
Length = 564
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 136 FGNVGLHTCRYLVRAGATCIGVIEHDGSIYNPDGIN 243
F +G+H + AGAT GS+ P G+N
Sbjct: 270 FAPIGVHIAMIFIMAGATLSATGSFKGSVDVPQGLN 305
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,293,499
Number of Sequences: 37544
Number of extensions: 420199
Number of successful extensions: 1287
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1284
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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