Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0859
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73899-2|CAA98074.1| 536|Caenorhabditis elegans Hypothetical pr... 258 4e-69
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 31 1.2
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 31 1.2
Z93391-7|CAB07685.3| 405|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 30 2.0
U64835-5|AAG24196.1| 592|Caenorhabditis elegans Hypothetical pr... 29 3.5
U00065-8|AAL02473.1| 501|Caenorhabditis elegans Hypothetical pr... 29 3.5
U00065-7|AAL02474.1| 1090|Caenorhabditis elegans Hypothetical pr... 29 3.5
U00065-6|AAL02472.1| 1051|Caenorhabditis elegans Hypothetical pr... 29 3.5
AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric ... 29 3.5
AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric ... 29 3.5
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 29 4.7
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 29 4.7
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 29 4.7
Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z78198-6|CAB01572.2| 848|Caenorhabditis elegans Hypothetical pr... 28 8.1
U97014-1|AAB52425.1| 893|Caenorhabditis elegans Hypothetical pr... 28 8.1
>Z73899-2|CAA98074.1| 536|Caenorhabditis elegans Hypothetical
protein ZK829.4 protein.
Length = 536
Score = 258 bits (631), Expect = 4e-69
Identities = 121/181 (66%), Positives = 150/181 (82%), Gaps = 2/181 (1%)
Frame = +1
Query: 118 TFIVQGFGNVGLHTCRYLVRAGATCIGVIEHDGSIYNPDGINPKALEDYRIENGTVVGFP 297
T I+QGFGNVGLHT RYL RAG+ IG+ E+D ++YNPDGI+PK LED++ NGT+ FP
Sbjct: 281 TAIIQGFGNVGLHTHRYLHRAGSKVIGIQEYDCAVYNPDGIHPKELEDWKDANGTIKNFP 340
Query: 298 GAKAYEG-ENMLYEKCDILVPAAIEQVINKDNAHRIQAKIIAEAANGPTTPAADKILIDR 474
GAK ++ ++YEKCDI VPAA E+ I+K+NA RIQAKIIAEAANGPTTPAAD+IL+ R
Sbjct: 341 GAKNFDPFTELMYEKCDIFVPAACEKSIHKENASRIQAKIIAEAANGPTTPAADRILLAR 400
Query: 475 -NILVIPDLYINAGGVTVSFFEWLKNLNHVSYGRLTFKYERESNYHLLESVQESLERRFG 651
+ L+IPD+Y+N+GGVTVS+FEWLKNLNHVSYGRLTFKY+ E+N LL SVQESL + G
Sbjct: 401 GDCLIIPDMYVNSGGVTVSYFEWLKNLNHVSYGRLTFKYDEEANKMLLASVQESLSKAVG 460
Query: 652 R 654
+
Sbjct: 461 K 461
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = +3
Query: 693 FXXKIXGASEKDIVHSGLD 749
F KI GASEKDIVHSGL+
Sbjct: 471 FAAKIAGASEKDIVHSGLE 489
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +3
Query: 258 GLQNRERYGSXXXXXXXXXXXEHALREVRHSCTRRHRTGHKQGQRSQDPS*D-HCGGRQR 434
G Q+ +RY + E+ R ++ + HR KQ + +D + D H GG++
Sbjct: 665 GEQDYDRYNNYRDAENALIEEEYNTRHLKRTTEHPHR---KQPPQKRDNTKDQHRGGKKS 721
Query: 435 SHHTCCRQDPHR 470
SHH R+ HR
Sbjct: 722 SHHH-SRETKHR 732
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +3
Query: 258 GLQNRERYGSXXXXXXXXXXXEHALREVRHSCTRRHRTGHKQGQRSQDPS*D-HCGGRQR 434
G Q+ +RY + E+ R ++ + HR KQ + +D + D H GG++
Sbjct: 887 GEQDYDRYNNYRDAENALIEEEYNTRHLKRTTEHPHR---KQPPQKRDNTKDQHRGGKKS 943
Query: 435 SHHTCCRQDPHR 470
SHH R+ HR
Sbjct: 944 SHHH-SRETKHR 954
>Z93391-7|CAB07685.3| 405|Caenorhabditis elegans Hypothetical
protein W04G5.9 protein.
Length = 405
Score = 30.3 bits (65), Expect = 1.5
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = +2
Query: 227 TLMASTLRPWRTTESR--TVR*SVSPALRPTKARTCFTRSATFLYPPPSNRS*TRTTLTG 400
T +ST R TT++ T+R + P T A T T T PPP + T TT
Sbjct: 165 TTRSSTARTVATTKTSPSTLRTTTKPPTTTTIATTRITTKTT-TSPPPFTTTVTTTTSAA 223
Query: 401 SKLRSLRRPPTVPP 442
+ + TVPP
Sbjct: 224 RTIATTTPIKTVPP 237
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 29.9 bits (64), Expect = 2.0
Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +2
Query: 212 TAPFTTLMASTLRPWRTTESRTVR*SVSPALRP-TKARTCFTRSATFLYPPPSNRS*TRT 388
T P TTL ST TTE T + SP+ P T T + S+T + P S S T T
Sbjct: 426 TEPTTTLTTSTAST-STTEPSTSTVTTSPSTSPVTSTVTSSSSSSTTVTTPTSTES-TST 483
Query: 389 TLTGSKLRSLRRPPT 433
+ + + S P T
Sbjct: 484 SPSSTVTTSTTAPST 498
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 29.9 bits (64), Expect = 2.0
Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +2
Query: 212 TAPFTTLMASTLRPWRTTESRTVR*SVSPALRP-TKARTCFTRSATFLYPPPSNRS*TRT 388
T P TTL ST TTE T + SP+ P T T + S+T + P S S T T
Sbjct: 426 TEPTTTLTTSTAST-STTEPSTSTVTTSPSTSPVTSTVTSSSSSSTTVTTPTSTES-TST 483
Query: 389 TLTGSKLRSLRRPPT 433
+ + + S P T
Sbjct: 484 SPSSTVTTSTTAPST 498
>U64835-5|AAG24196.1| 592|Caenorhabditis elegans Hypothetical
protein T09D3.3 protein.
Length = 592
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/58 (36%), Positives = 27/58 (46%)
Frame = +2
Query: 260 TTESRTVR*SVSPALRPTKARTCFTRSATFLYPPPSNRS*TRTTLTGSKLRSLRRPPT 433
T E +T + +P PT T T SAT L P S+ + T TT T + S PT
Sbjct: 430 TKEPKTTIFTTTPVPCPTTTST--TTSATTLVPTTSSSTTTTTTTTPVPVTSTTTEPT 485
>U00065-8|AAL02473.1| 501|Caenorhabditis elegans Hypothetical
protein D1044.2b protein.
Length = 501
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Frame = +1
Query: 295 PGAKAYEGENMLYEKC--DILVPAAIEQVINKDNAHRIQAKIIAEAANGPTTPAADKILI 468
PG Y + C I VP +++++ A R+ +K++ E G T P+ L+
Sbjct: 52 PGTWLYRIDKAQLMPCAQPIQVPPYCDRLLS--TAPRLPSKLLEEKKEGLTLPSPGAFLV 109
Query: 469 DR-NILVIPDLYINAGGVT 522
D+ + ++P L G VT
Sbjct: 110 DQPSETIVPTLVRGGGTVT 128
>U00065-7|AAL02474.1| 1090|Caenorhabditis elegans Hypothetical
protein D1044.2c protein.
Length = 1090
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Frame = +1
Query: 295 PGAKAYEGENMLYEKC--DILVPAAIEQVINKDNAHRIQAKIIAEAANGPTTPAADKILI 468
PG Y + C I VP +++++ A R+ +K++ E G T P+ L+
Sbjct: 602 PGTWLYRIDKAQLMPCAQPIQVPPYCDRLLS--TAPRLPSKLLEEKKEGLTLPSPGAFLV 659
Query: 469 DR-NILVIPDLYINAGGVT 522
D+ + ++P L G VT
Sbjct: 660 DQPSETIVPTLVRGGGTVT 678
>U00065-6|AAL02472.1| 1051|Caenorhabditis elegans Hypothetical
protein D1044.2a protein.
Length = 1051
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Frame = +1
Query: 295 PGAKAYEGENMLYEKC--DILVPAAIEQVINKDNAHRIQAKIIAEAANGPTTPAADKILI 468
PG Y + C I VP +++++ A R+ +K++ E G T P+ L+
Sbjct: 602 PGTWLYRIDKAQLMPCAQPIQVPPYCDRLLS--TAPRLPSKLLEEKKEGLTLPSPGAFLV 659
Query: 469 DR-NILVIPDLYINAGGVT 522
D+ + ++P L G VT
Sbjct: 660 DQPSETIVPTLVRGGGTVT 678
>AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform a protein.
Length = 1724
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/78 (24%), Positives = 37/78 (47%)
Frame = +1
Query: 238 INPKALEDYRIENGTVVGFPGAKAYEGENMLYEKCDILVPAAIEQVINKDNAHRIQAKII 417
+NP LE+ +I++ T+ A E + ++ E + + AA E+ + +N H K +
Sbjct: 1482 LNPPNLEETKIDDTTINRSKQADKTEEKTIVEE--EPMEEAAAEKTVTAENDHVDAEKTV 1539
Query: 418 AEAANGPTTPAADKILID 471
P T A + ++D
Sbjct: 1540 IAVEIPPATEAEEDEVVD 1557
>AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform b protein.
Length = 1758
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/78 (24%), Positives = 37/78 (47%)
Frame = +1
Query: 238 INPKALEDYRIENGTVVGFPGAKAYEGENMLYEKCDILVPAAIEQVINKDNAHRIQAKII 417
+NP LE+ +I++ T+ A E + ++ E + + AA E+ + +N H K +
Sbjct: 1482 LNPPNLEETKIDDTTINRSKQADKTEEKTIVEE--EPMEEAAAEKTVTAENDHVDAEKTV 1539
Query: 418 AEAANGPTTPAADKILID 471
P T A + ++D
Sbjct: 1540 IAVEIPPATEAEEDEVVD 1557
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -1
Query: 522 GDTTSVDVEVGDHENVAIDEDLVCSRCGGTVGGLR 418
G+TT ++VG E VA D L + G VGGLR
Sbjct: 2408 GETT---IDVGTDETVASDIGLTTHKFSGIVGGLR 2439
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -1
Query: 522 GDTTSVDVEVGDHENVAIDEDLVCSRCGGTVGGLR 418
G+TT ++VG E VA D L + G VGGLR
Sbjct: 2408 GETT---IDVGTDETVASDIGLTTHKFSGIVGGLR 2439
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -1
Query: 522 GDTTSVDVEVGDHENVAIDEDLVCSRCGGTVGGLR 418
G+TT ++VG E VA D L + G VGGLR
Sbjct: 2408 GETT---IDVGTDETVASDIGLTTHKFSGIVGGLR 2439
>Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical
protein F52G2.2a protein.
Length = 1319
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 193 IGVIEHDGSIYNPDGINPKALEDYRIENGTVVGF 294
+G++ D SIY D K E R+ N +GF
Sbjct: 785 LGIVVADSSIYGSDNEQSKVFEFERLRNPITLGF 818
>Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical
protein F52G2.2b protein.
Length = 1129
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 193 IGVIEHDGSIYNPDGINPKALEDYRIENGTVVGF 294
+G++ D SIY D K E R+ N +GF
Sbjct: 595 LGIVVADSSIYGSDNEQSKVFEFERLRNPITLGF 628
>Z78198-6|CAB01572.2| 848|Caenorhabditis elegans Hypothetical
protein F55C5.7 protein.
Length = 848
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 157 TCRYLVRAGATCIGVIEHDGSIYNPDGINPKALEDYRI 270
T +YLV+A + DGS++N +G+ A++D I
Sbjct: 306 TAKYLVKAEKLYRTYLSLDGSVFNFEGLLTAAMQDPNI 343
>U97014-1|AAB52425.1| 893|Caenorhabditis elegans Hypothetical
protein T05E8.1 protein.
Length = 893
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +1
Query: 268 IENGTVVGFPGAKAYEGENMLYEKCDILV--PAAIEQVINK-DNAHRIQAK 411
I +GFPG E +++ YE C L ++EQ+I K N +I+ K
Sbjct: 216 IAKWVALGFPGMSDEEPDDIAYENCGFLKIRVFSVEQLIRKMINERKIKKK 266
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,489,497
Number of Sequences: 27780
Number of extensions: 305784
Number of successful extensions: 985
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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