Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0858
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    28   1.6  
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    26   6.6  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    25   8.7  

>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 691 YNINSKTFF*EIILNLESGIRVIFNNILLIFWNEF 587
           Y INS     EI+   E G+R +   +L+ +WN +
Sbjct: 623 YLINSPVVRAEILKFKEDGVREVVTRVLIPWWNSY 657


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +2

Query: 386 QIKCSYPEKQRSKLDLAS*FYLSK 457
           +IKC++P+   +++D  + FYLSK
Sbjct: 557 KIKCNFPKVLLAQIDQFTDFYLSK 580


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -3

Query: 244 MLNNYKRLSLKDFTRFCLCFVLTL--KIGIMRHALLNHTKY 128
           +L N+ R S  D T   L  V TL  ++G   H++L HTKY
Sbjct: 519 LLCNFVRSSGMDPTFLDLWDVKTLFHEMGHAMHSILGHTKY 559


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,563,346
Number of Sequences: 5004
Number of extensions: 47510
Number of successful extensions: 112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)