Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0858
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    25   0.76 
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   5.3  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   5.3  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   9.3  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 304 YSNVQELSGSHSAY*CVNNVMLNNYKRL 221
           YSN    + +++ Y   NN   NNYK+L
Sbjct: 324 YSNYNNYNNNYNNYNNYNNNYNNNYKKL 351


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -3

Query: 619 NNILLIFWNEF*KIFLQTDV 560
           N IL I W  + K+F++ ++
Sbjct: 98  NQILHILWTSYKKVFMKDNI 117


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -3

Query: 619 NNILLIFWNEF*KIFLQTDV 560
           N IL I W  + K+F++ ++
Sbjct: 81  NQILHILWTSYKKVFMKDNI 100


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +2

Query: 284 ELLDIAIYCSSRRENIYFLY 343
           + L +A+YC  R     F+Y
Sbjct: 108 DFLSVAVYCRDRLNPNLFIY 127


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,350
Number of Sequences: 438
Number of extensions: 2898
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)