Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0857
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0286 - 27506925-27507278,27508439-27508812,27509041-275092...    29   3.5  

>02_05_0286 -
           27506925-27507278,27508439-27508812,27509041-27509218,
           27510878-27511105,27511215-27511316,27511415-27512131,
           27512270-27512387,27512500-27512744,27512854-27513054,
           27513920-27514324
          Length = 973

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +1

Query: 349 LSELESLFQKTHYPDVFLREEVALRISLSEARVQ 450
           + ELE+LF++  +PD   R E++ R+SL   +V+
Sbjct: 279 IQELEALFKECPHPDEKQRAELSRRLSLDARQVK 312


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,363,053
Number of Sequences: 37544
Number of extensions: 327839
Number of successful extensions: 796
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)