Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0856
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...   109   3e-25
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...   106   4e-24
SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...    84   2e-17
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    28   1.2  
SPCC777.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   6.6  

>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score =  109 bits (263), Expect = 3e-25
 Identities = 60/110 (54%), Positives = 73/110 (66%)
 Frame = +3

Query: 87  KALSGGVQIEDLKLGNGPVAKPGKVVMVYYEGRLKQNNKMFDNCLKGPGFKFRLGAKEVI 266
           + L GGV + D+K G+G  A  GK V + Y G+L +N K+FD   KG  F F LG  EVI
Sbjct: 253 RTLKGGVVVTDVKTGSGASATNGKKVEMRYIGKL-ENGKVFDKNTKGKPFAFILGRGEVI 311

Query: 267 SGWDVGVSGMKVGGKRKIICPPGMAYGAKGSPPVIPPNSTLVFEVELKNV 416
            GWDVGV+GM+ GG+RKI  P  MAYG + S P IP NSTLVFEV+L  V
Sbjct: 312 RGWDVGVAGMQEGGERKITIPAPMAYGNQ-SIPGIPKNSTLVFEVKLVRV 360


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score =  106 bits (254), Expect = 4e-24
 Identities = 56/108 (51%), Positives = 70/108 (64%)
 Frame = +3

Query: 84  KKALSGGVQIEDLKLGNGPVAKPGKVVMVYYEGRLKQNNKMFDNCLKGPGFKFRLGAKEV 263
           K+ L G V ++D   G+GP AK  K V + Y GRL  N K+FD  + G  F F LG +EV
Sbjct: 253 KQVLEGNVTVQDKVKGDGPAAKRKKRVSMRYIGRLT-NGKVFDKNITGKPFTFNLGLEEV 311

Query: 264 ISGWDVGVSGMKVGGKRKIICPPGMAYGAKGSPPVIPPNSTLVFEVEL 407
           I GWDVG+ GM+VGG+R I  P  MAYG+K  P  IP NS LVF+V+L
Sbjct: 312 IKGWDVGIVGMQVGGERTIHIPAAMAYGSKRLPG-IPANSDLVFDVKL 358


>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score = 83.8 bits (198), Expect = 2e-17
 Identities = 44/104 (42%), Positives = 62/104 (59%), Gaps = 2/104 (1%)
 Frame = +3

Query: 102 GVQIEDLKLGNGP-VAKPGKVVMVYYEGRLKQNNKMFDNCL-KGPGFKFRLGAKEVISGW 275
           GV+ + +  GNG    KPG  + ++Y G L  N K FD+ + +G  F   +G  ++I GW
Sbjct: 2   GVEKQVISSGNGQDFPKPGDRITMHYTGTLT-NGKKFDSSVDRGSPFVCTIGVGQLIRGW 60

Query: 276 DVGVSGMKVGGKRKIICPPGMAYGAKGSPPVIPPNSTLVFEVEL 407
           D GV  M +G K K+   P   YG +G P +IPPNSTL+F+VEL
Sbjct: 61  DEGVPKMSLGEKAKLTITPDYGYGPRGFPGLIPPNSTLLFDVEL 104


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
 Frame = -2

Query: 329 RADNLPFASDFH-TRNTNIP 273
           R D++PFASDF  +R TN+P
Sbjct: 180 RCDDIPFASDFFCSRETNMP 199


>SPCC777.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 238

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = -2

Query: 263 DLFCAKTELESRSLEAVVKHFVVLFKATFIVDHDNFAWLSNRTITKFQVLNLY 105
           D+  A+  L S SLE  V+  +    + + +D+ NF  +S + + K + + LY
Sbjct: 105 DVHFARVYLSS-SLELSVRLLISRIPSYYFIDNQNFYRVSPQVLPKNKAIALY 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,869,128
Number of Sequences: 5004
Number of extensions: 60660
Number of successful extensions: 153
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)