Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0856
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   5.3  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   7.1  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    22   7.1  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   7.1  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   9.3  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 458 DCHCMNETCMFANLK 502
           DCH  +  C FA++K
Sbjct: 362 DCHTAHIACKFADIK 376


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 458 DCHCMNETCMFANLK 502
           DCH  +  C FA +K
Sbjct: 362 DCHTAHIACKFAEIK 376


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 458 DCHCMNETCMFANLK 502
           DCH  +  C FA +K
Sbjct: 73  DCHTAHIACKFAEIK 87


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -2

Query: 281 NIPAANDLFCAKTELESRSLEAVVKHFV 198
           ++ + ND++C K E    +   + KH V
Sbjct: 154 DLKSHNDIYCEKYEKNGETYLRIKKHAV 181


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/29 (27%), Positives = 13/29 (44%)
 Frame = +3

Query: 522 FICHR*EYKIVKKNMINNFFSFDGQYYLF 608
           F C +  Y  V K+M+N+        Y +
Sbjct: 17  FKCEKCSYSCVNKSMLNSHLKSHSNVYQY 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,929
Number of Sequences: 438
Number of extensions: 4197
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)