Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0855
(509 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein S12|Schizosa... 153 1e-38
SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein S12|Sch... 153 1e-38
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 32 0.057
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 31 0.10
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p... 27 1.6
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 27 2.2
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 27 2.2
SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||... 25 5.0
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|... 25 5.0
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 25 6.6
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 25 6.6
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 25 8.7
>SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein
S12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 153 bits (372), Expect = 1e-38
Identities = 70/111 (63%), Positives = 87/111 (78%)
Frame = +1
Query: 79 VNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQ 258
V +L+EVLK AL+H GL G+ EA+KALD+RQA LCVL E+CD+ AY KLV+ALC E Q
Sbjct: 32 VEDSLKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALCAESQ 91
Query: 259 IPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVL 411
PLVKV + K LGEWAGLC +D+DG ARK+VGCSCV + D+GE++ AL L
Sbjct: 92 TPLVKVADPKILGEWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSVALQTL 142
>SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein
S12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 145
Score = 153 bits (372), Expect = 1e-38
Identities = 70/114 (61%), Positives = 88/114 (77%)
Frame = +1
Query: 70 TWXVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCN 249
T V AL+EVLK AL+H GL G+ EA+KALD+RQA LCVL E+CD+ AY KLV+ALC
Sbjct: 26 TVSVEDALKEVLKRALVHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALCA 85
Query: 250 EHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVL 411
E + PL+KV + K LGEWAGLC +D+DG ARK+VGCSCV + D+GE++ AL L
Sbjct: 86 ESETPLIKVADPKVLGEWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSAALQKL 139
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 31.9 bits (69), Expect = 0.057
Identities = 17/74 (22%), Positives = 35/74 (47%)
Frame = +1
Query: 79 VNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQ 258
+N + + +K A ++ G+ E KA+ K + L +LA + + LC ++
Sbjct: 37 LNKKMMKTVKKASKQKHILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNN 96
Query: 259 IPLVKVDNNKKLGE 300
+P + + + LGE
Sbjct: 97 VPYLYTVSKELLGE 110
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 31.1 bits (67), Expect = 0.10
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 136 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 297
+GL+ ++ ++A L ++A + D + ALC + +P V N +LG
Sbjct: 134 YGLNHVVALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLG 187
>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 404
Score = 27.1 bits (57), Expect = 1.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3
Query: 399 RWSFLAEIFDDNTGAADNFPCLAIL 325
RW +LA +F N A N P + +L
Sbjct: 257 RWEYLASLFTSNFTAVHNIPSVPLL 281
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 26.6 bits (56), Expect = 2.2
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = -2
Query: 223 CMRLHHSSQPKHIVLLASCQEL*RLREDRAQDHHGLKLSLAPLAVLHSRXMLLPDKMGLV 44
C+ S +HIV A L +D +DH G+ L ++P V + + P M +
Sbjct: 517 CVLCTTSESGEHIVAGAGELHLEICLKDLQEDHAGIPLKISPPVVSYRESVSEPSSMTAL 576
Query: 43 GTS 35
S
Sbjct: 577 SKS 579
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 26.6 bits (56), Expect = 2.2
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = -2
Query: 223 CMRLHHSSQPKHIVLLASCQEL*RLREDRAQDHHGLKLSLAPLAVLHSRXMLLPDKMGLV 44
C+ S +HIV A L +D +DH G+ L ++P V + + P M +
Sbjct: 517 CVLCTTSESGEHIVAGAGELHLEICLKDLQEDHAGIPLKISPPVVSYRESVSEPSSMTAL 576
Query: 43 GTS 35
S
Sbjct: 577 SKS 579
>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 356
Score = 25.4 bits (53), Expect = 5.0
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +1
Query: 40 SPPTPSCRVTTWXVNVALQEVLKTALIHG--GLVHGLHEAAKALDKRQAVLCVLAENCDE 213
SP P+ +V N+ +++ + +++G GL L E+A L + VL +
Sbjct: 229 SPAVPTGKVFFDIYNI--KQLPRVDILYGYQGLNPKLAESAVHLGAKGLVLAAMGATSWT 286
Query: 214 AAYKKLVQALCNEHQIPLV 270
+++ +L EH IP+V
Sbjct: 287 DDGNEVISSLIREHNIPVV 305
>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 25.4 bits (53), Expect = 5.0
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +1
Query: 40 SPPTPSCRVTTWXVNVALQEVLKTALIHG--GLVHGLHEAAKALDKRQAVLCVLAENCDE 213
SP P+ +V N+ +++ + +++G GL L E+A L + VL +
Sbjct: 229 SPAVPTGKVFFDIYNI--KQLPRVDILYGYQGLNPKLAESAVHLGAKGLVLAAMGATSWT 286
Query: 214 AAYKKLVQALCNEHQIPLV 270
+++ +L EH IP+V
Sbjct: 287 DDGNEVISSLIREHNIPVV 305
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 25.0 bits (52), Expect = 6.6
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +2
Query: 194 WLRTVMKPHTRNLFRLCATNIRFHWSRLTTTKSLE 298
++ +V P L+RLC++ R W ++SL+
Sbjct: 220 FILSVFHPDAARLYRLCSSLKRICWELYDPSRSLD 254
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 25.0 bits (52), Expect = 6.6
Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -2
Query: 367 QHRSSRQFSLPCHPCQSCRD-QPILQAF 287
+ ++ +QF LP PCQ+ + +PI+++F
Sbjct: 226 KRKALKQFPLPPDPCQALANLRPIVKSF 253
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 969
Score = 24.6 bits (51), Expect = 8.7
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 341 GKLSAAPVLSSKISARKLQR 400
G S+A +L+ K+ ARKLQR
Sbjct: 28 GTSSSANILNGKLLARKLQR 47
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,931,996
Number of Sequences: 5004
Number of extensions: 36465
Number of successful extensions: 122
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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