Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0850
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    30   0.40 
SPACUNK4.06c |rpb7|SPAPYUK71.02|DNA-directed RNA polymerase comp...    27   2.9  
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    27   3.8  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    26   5.0  
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos...    26   6.6  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    25   8.7  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   8.7  

>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 456 QMLTDVVLEVGNELFHVHKVVLAAGSPYFKAM 551
           Q  +DV +  G  +FH HK +L A S + + +
Sbjct: 616 QSFSDVTIYCGTSMFHSHKFILCARSSFLRKL 647


>SPACUNK4.06c |rpb7|SPAPYUK71.02|DNA-directed RNA polymerase complex
           II subunit Rpb7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 172

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 371 PTPGGILEVAVTT-NRRQVIQHVGPSRVFVSFH 276
           P  G +++  VTT N+     ++GP  VFVS H
Sbjct: 82  PFRGEVVDAIVTTVNKMGFFANIGPLNVFVSSH 114


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = +3

Query: 411 YISEFMKMMFTMRSHQMLTDVVLEVGNELFHVHKVVLAAGSPYFKAMFT 557
           Y S    ++     H   TD+V          HK  LAA S YFK+ F+
Sbjct: 150 YASHITSLLSNSALH-FTTDIVFAGQYGRVFAHKFYLAARSSYFKSKFS 197


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = -2

Query: 365 PGGILEVAVTTNRRQVIQHVGPSRVFVSFHYCTFIYYLKSP 243
           PG + ++     RR+ I  +    +F   HYC   + +K P
Sbjct: 371 PGYVDKIGAVVQRREEISKLLDKDLFNQSHYCLKCFQVKPP 411


>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
           Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -2

Query: 428 HELTDVISHAE-CHIADLVGPTPGGILEV 345
           H ++DV+ + E CHI D +  T GGI ++
Sbjct: 375 HYISDVLFNNEWCHIDDSIVRTVGGITDL 403


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = -2

Query: 548 RLKIRTARR*YNFVDVKEFVSNFQHDISQHLV*SHCKHHLHELTDVISHAECHIADLV 375
           RL + T +R    V++K+     Q +  +H V  HC+ HL  + + +    C    LV
Sbjct: 187 RLNLDTIKR-NALVELKKLRLIKQQESLRHQV-MHCQPHLRTIVNAVERMSCRRPKLV 242


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 295 RDGPTCWMTCLRLVVTATSRIPP 363
           R     +M C R V+  T+RIPP
Sbjct: 638 RSADLIFMDCKRSVINTTTRIPP 660


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,996,221
Number of Sequences: 5004
Number of extensions: 61017
Number of successful extensions: 136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)