Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0848
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    29   0.48 
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po...    29   0.48 
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   4.5  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   6.0  

>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 526

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = -1

Query: 235 LQCDRSKLNSGMTISRILLRCVLKPSRSLTIVTKAWFYSTNTISS 101
           L+ D +K  S    SRILL      +  L IVTK  F+  NT+S+
Sbjct: 129 LEQDTAKSTSAKNPSRILLDYNRAGTPLLEIVTKPCFHDVNTVSA 173


>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 380

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = +2

Query: 5   STASYQPSYQISTQNYQPATNSHGDASSINVGAGYSI-----GGIKPSFSYDGQ 151
           S + YQ   Q+ +Q+ Q   N  G+ +S  +G  Y        GIKP F +DG+
Sbjct: 36  SMSLYQFLIQVRSQDGQQLMNEQGETTSHLMGMFYRTLRIVDNGIKPCFVFDGK 89


>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 368

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 446 LGGSPAHYASGVKGLSSYGST 508
           LG SPA  ASG+ G S +GS+
Sbjct: 109 LGTSPAEPASGLVGSSGFGSS 129


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +2

Query: 83  SSINVGAGYSIGGIKPSFSYDGQGSAGLQYASQEYPANGHA 205
           ++ N G  +S G    S  +  QG+ G  + S   PA  +A
Sbjct: 121 NNANTGTSFSFGSNAGSTGFGSQGTGGGLFGSSTTPATTNA 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,684,881
Number of Sequences: 5004
Number of extensions: 50880
Number of successful extensions: 159
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)