Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0848
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0630 - 19410852-19411235,19411370-19412257,19412440-194129...    30   1.5  
12_02_0589 + 20850249-20850491,20850583-20851839                       29   4.7  
03_06_0193 + 32243458-32243556,32243566-32244273                       29   4.7  
10_01_0267 - 2828966-2829340,2831164-2831629,2833390-2833487,283...    28   6.2  
03_06_0146 - 31976538-31978643,31978653-31978751                       28   6.2  
03_01_0092 - 731069-731434,731569-733080                               28   6.2  
07_01_0281 - 2067696-2068862                                           28   8.2  
01_06_1140 - 34836967-34836996,34837107-34838771                       28   8.2  

>10_08_0630 -
           19410852-19411235,19411370-19412257,19412440-19412941,
           19413662-19414135,19414982-19415040,19415468-19415629
          Length = 822

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
 Frame = +2

Query: 5   STASYQPSYQISTQNYQPATNSHGDASSINVGAGYSIGGIKPSFSYDGQGSAGLQYASQE 184
           + A+ QPS Q +T++  PAT     +  I + A  +         YDG G  G Q +S  
Sbjct: 457 AAAASQPSPQ-ATKSPLPATPQTQSSMDIVMTAAEAHDA-----GYDGSGGGGGQPSSSR 510

Query: 185 YP-ANGHATIQLAPITLQPTHGAG--GLVSGDISQIMNQLSHSLNS 313
           +P A  HA IQL          AG  G +  +IS  M +L +S +S
Sbjct: 511 WPKAEVHALIQLRSNLDNRYQEAGPKGPLWEEISAGMRRLGYSRSS 556


>12_02_0589 + 20850249-20850491,20850583-20851839
          Length = 499

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -1

Query: 253 ACAVSG-LQCDRSKLNSGMTISRILLRCVLKPSRSLTIVTKAWFYSTNTISSSDINR 86
           A AVSG  +    +   G T+ R LL+ +  P RS  +V + W     T+    +NR
Sbjct: 10  AAAVSGGAEGGGGEGRGGDTLGRRLLKLIY-PKRSAAVVLRRWAEEGRTVQKYQLNR 65


>03_06_0193 + 32243458-32243556,32243566-32244273
          Length = 268

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/63 (25%), Positives = 25/63 (39%)
 Frame = +2

Query: 68  SHGDASSINVGAGYSIGGIKPSFSYDGQGSAGLQYASQEYPANGHATIQLAPITLQPTHG 247
           S  D  S+ +  G  +GG      +  +G A     +    A  H TI +  + LQP+  
Sbjct: 8   SDSDGDSVELHDGSDVGGSDSESGFAVRGRAAAAVGADTPAALPHTTIAVEAVPLQPSPS 67

Query: 248 AGG 256
             G
Sbjct: 68  PPG 70


>10_01_0267 -
           2828966-2829340,2831164-2831629,2833390-2833487,
           2833782-2834078,2834287-2834694
          Length = 547

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = +2

Query: 152 GSAGLQYASQEYPANGHATIQLAPITLQPTHGAGGLVSGDISQI 283
           GS+G  YA ++ P  G AT+Q   + LQ  HG GG V  + S++
Sbjct: 4   GSSGGGYADEKGP--GAATMQA--LGLQQQHGGGGEVEEESSEM 43


>03_06_0146 - 31976538-31978643,31978653-31978751
          Length = 734

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/63 (25%), Positives = 25/63 (39%)
 Frame = +2

Query: 68  SHGDASSINVGAGYSIGGIKPSFSYDGQGSAGLQYASQEYPANGHATIQLAPITLQPTHG 247
           S  D  S+ +  G  +GG      +  +G A     +    A  H TI +  + LQP+  
Sbjct: 8   SDSDGDSVELHDGSDVGGSDSESGFAVRGRAAAVVGADTPAALPHTTIAVEAVPLQPSPS 67

Query: 248 AGG 256
             G
Sbjct: 68  PPG 70


>03_01_0092 - 731069-731434,731569-733080
          Length = 625

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 65  NSHGDASSINVGAGYSIGGIKPSFSYDGQGSAG 163
           N +G AS+ N G G S GG++   S +G  +AG
Sbjct: 448 NGNGWASANNGGGGSSSGGMQTKASNNGTATAG 480


>07_01_0281 - 2067696-2068862
          Length = 388

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 44  QNYQPATNSHGDASSINVGAGYSIGGIKPSFSYDGQGSAGLQ 169
           Q+ +  T++ G  S  + G G S  G KP+ S     SAG Q
Sbjct: 231 QHGRITTSNGGSGSGSDKGKGVSYAGDKPASSSSSSSSAGQQ 272


>01_06_1140 - 34836967-34836996,34837107-34838771
          Length = 564

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 376 SAFTANVEFCNAVGWLQGKSSRIKTMAQLIHNLGDI 269
           SAF   V  CNA+  L GK  ++   A +   + DI
Sbjct: 232 SAFEQEVSVCNALVDLYGKCHKVDDAAMVFEGMADI 267


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,192,315
Number of Sequences: 37544
Number of extensions: 359636
Number of successful extensions: 916
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)