Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0848
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73898-8|CAJ90496.1|  431|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z73898-7|CAA98070.1|  577|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AF039053-3|AAC25880.2|  349|Caenorhabditis elegans Hypothetical ...    29   3.2  
AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily a...    28   7.4  
U64609-6|AAB04603.1|  194|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U40802-11|AAK19013.1|  194|Caenorhabditis elegans Hypothetical p...    27   9.8  

>Z73898-8|CAJ90496.1|  431|Caenorhabditis elegans Hypothetical
           protein ZK822.5b protein.
          Length = 431

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 182 EYPANGHATIQLAPITLQPTHGAGGL-VSGDISQIMNQLSHSLNSGALSL 328
           E   + H TI  A   LQPT G  GL VS  +S  ++ LS  +NS A ++
Sbjct: 176 EVKESDHITISFARDILQPTPGLFGLYVSCIMSATLSTLSSGMNSMAAAI 225


>Z73898-7|CAA98070.1|  577|Caenorhabditis elegans Hypothetical
           protein ZK822.5a protein.
          Length = 577

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 182 EYPANGHATIQLAPITLQPTHGAGGL-VSGDISQIMNQLSHSLNSGALSL 328
           E   + H TI  A   LQPT G  GL VS  +S  ++ LS  +NS A ++
Sbjct: 322 EVKESDHITISFARDILQPTPGLFGLYVSCIMSATLSTLSSGMNSMAAAI 371


>AF039053-3|AAC25880.2|  349|Caenorhabditis elegans Hypothetical
           protein C45H4.13 protein.
          Length = 349

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = +2

Query: 5   STASYQPSYQISTQNYQPATNSHGDASSINVGAGYSIGGIKPSFSYDGQGSAGLQYAS 178
           S++SY  S   S  +Y P+ +S+ D +S +  + YS     PS+S  G   +   Y++
Sbjct: 242 SSSSYSSSDSSSYSSYTPSISSNSDYTSYS-PSYYSYSSYSPSYSSYGSSYSPSYYSN 298



 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +2

Query: 14  SYQPSYQISTQNYQPATNSHGDASSINVGAGYSIGGIKPSFSYDGQGSAGLQYASQEYPA 193
           SY PSY  S  +Y P+ +S+G + S +  + Y  G     ++  G G     Y+   Y  
Sbjct: 269 SYSPSYY-SYSSYSPSYSSYGSSYSPSYYSNYYGGYNNYGYNNYGYGYNNNYYSGNYYCC 327

Query: 194 NGH 202
           N +
Sbjct: 328 NSY 330


>AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 168 protein.
          Length = 1347

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +2

Query: 20   QPSYQISTQNYQPATNSHGDASSINVGAGYSIGGIKPSFSYDGQGSAG 163
            +P  Q S  +  P+  S G  +     A  + GGIKP       GSAG
Sbjct: 1253 KPIRQSSQTSAGPSQGSSGGLAGAVASAAAASGGIKPVAKKSSAGSAG 1300


>U64609-6|AAB04603.1|  194|Caenorhabditis elegans Hypothetical
           protein T28H11.7 protein.
          Length = 194

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/60 (26%), Positives = 31/60 (51%)
 Frame = -1

Query: 373 AFTANVEFCNAVGWLQGKSSRIKTMAQLIHNLGDISGY*TACAVSGLQCDRSKLNSGMTI 194
           A T   E  +A+G+ +  + R+K + + + NL DIS +    + SG   + S+L   + +
Sbjct: 18  ATTLPAEVDDAMGYFKNLTPRVKDLHKSMTNLEDISKWQKKASFSGTLENYSRLGDKINV 77


>U40802-11|AAK19013.1|  194|Caenorhabditis elegans Hypothetical
           protein ZC477.7 protein.
          Length = 194

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/60 (26%), Positives = 31/60 (51%)
 Frame = -1

Query: 373 AFTANVEFCNAVGWLQGKSSRIKTMAQLIHNLGDISGY*TACAVSGLQCDRSKLNSGMTI 194
           A T   E  +A+G+ +  + R+K + + + NL DIS +    + SG   + S+L   + +
Sbjct: 18  ATTLPAEVDDAMGYFKNLTPRVKDLHKSMTNLEDISKWQKKASFSGTLENYSRLGDKINV 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,797,875
Number of Sequences: 27780
Number of extensions: 284439
Number of successful extensions: 664
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)