Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0848
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   2.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.7  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    21   8.5  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    21   8.5  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    21   8.5  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +2

Query: 266 GDISQIMNQLSHSLNSG--ALSLQPSN 340
           GD+  I ++LSH + SG  A+ L P N
Sbjct: 47  GDLKGIKDKLSHFIESGITAIWLSPIN 73


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 155  SAGLQYASQEYPANGHATIQLAPITLQPTHGAGGLVSGDIS 277
            S  +Q+ +  +P NGH+     P+   PT+ +    SG  S
Sbjct: 1740 SKAMQFQTFPHPGNGHSGTMGPPVG-HPTNASAHSRSGSQS 1779


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 3   TLQQAISHHIKSVHK 47
           TLQ AIS H+K V +
Sbjct: 87  TLQSAISAHMKKVRE 101


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 3   TLQQAISHHIKSVHK 47
           TLQ AIS H+K V +
Sbjct: 87  TLQSAISAHMKKVRE 101


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 3   TLQQAISHHIKSVHK 47
           TLQ AIS H+K V +
Sbjct: 87  TLQSAISAHMKKVRE 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,237
Number of Sequences: 438
Number of extensions: 3872
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)