Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0847
(540 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe... 26 3.1
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 26 4.1
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom... 25 5.4
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces... 25 5.4
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 25 5.4
SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.2
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo... 25 7.2
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 25 9.5
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch... 25 9.5
>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 520
Score = 26.2 bits (55), Expect = 3.1
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = -2
Query: 464 LSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKNR 309
++L + + S +E ST+YS P E PD + + V+ KN+
Sbjct: 230 IALKEKESTSQDESNREAEEAPISTNYSFPSSSLEDQPDKNVQSSAVENKNK 281
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.8 bits (54), Expect = 4.1
Identities = 25/82 (30%), Positives = 35/82 (42%)
Frame = -2
Query: 479 SPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKNR*HR 300
S + S SQH L P E+KS D S PR + P S+ + +K+K R +
Sbjct: 134 SSSSSSSSQSSQHSTHLQFQIPSNEKKSLDDPS-PRRK----PSFFSK-SNLKRKYRYLK 187
Query: 299 SPRSKWASTSRLAF*MRNATSK 234
+P W L F +N K
Sbjct: 188 NP-DAWNLPPSLQFIPKNLNRK 208
>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 992
Score = 25.4 bits (53), Expect = 5.4
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +3
Query: 30 CDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA--SKAEASLAESG 179
CD+ + S G L H + R GG + + + N+ SK E +A SG
Sbjct: 601 CDACLNLGTHSESIGDLEHQIRRYTGGISISPSAVTNNSDVSKYELGIAISG 652
>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 312
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 391 VDDFRSWRGVVLGRAASCCDLLRLS 465
VD FR W + SC DLL+LS
Sbjct: 72 VDGFRLWITMEYCDGGSCLDLLKLS 96
>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 568
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +3
Query: 102 AGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQ 227
A A+ +A A +AEA E+ K+++ EP+++ +K+
Sbjct: 89 AAEAEAAAAARAAAAKEAEAKRLEAAKNIVLKEPKDAPAAKK 130
>SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 148
Score = 25.0 bits (52), Expect = 7.2
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +3
Query: 30 CDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNASK 152
C A + +S G +VHA RAA + A CL K
Sbjct: 54 CLHRCAFLDLTKSRGRVVHACSRAALPRAIADASHCLEEKK 94
>SPAC23H3.02c |ini1||RING finger-like protein
Ini1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 117
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 81 PNVRNCGSSRTEQYYYRNDKPSVG 10
P V N GSSRT+ +Y R + G
Sbjct: 86 PRVINLGSSRTDWFYERKKFKNAG 109
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 24.6 bits (51), Expect = 9.5
Identities = 20/88 (22%), Positives = 35/88 (39%)
Frame = +3
Query: 36 SNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESG 215
S+T+ R H L ++ L S G +S +++ GK+ V P +
Sbjct: 271 SSTSAKRRRPDHNH-TSTLDASSSNTSLASTGPMTVSS---STVERKGKEASEVNPNSTS 326
Query: 216 GSKQCDFTSRVSHSKRETRRRSPFGSRR 299
DF + +S S+ ++S G R
Sbjct: 327 SVTFSDFAAAISRSRCSRCKKSKKGCDR 354
>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 24.6 bits (51), Expect = 9.5
Identities = 19/83 (22%), Positives = 34/83 (40%)
Frame = +3
Query: 54 ERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCD 233
E N F V + +G + G L+++ + + + +PRE ++
Sbjct: 15 EPNSHFRRTVEEKSQLSGTNEESLGGHTLSSNAFKNNSSSISPSSSAKDPREQ---RKRT 71
Query: 234 FTSRVSHSKRETRRRSPFGSRRS 302
F +HS R + PF SR+S
Sbjct: 72 FPLNDTHSSRARQHERPFRSRKS 94
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,029,946
Number of Sequences: 5004
Number of extensions: 40600
Number of successful extensions: 123
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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