Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0847
         (540 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AL031630-13|CAA20992.1|  814|Caenorhabditis elegans Hypothetical...    27   6.5  
L37867-1|AAA63155.1|  319|Caenorhabditis elegans homeodomain pro...    27   8.6  

>Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical
           protein T02E9.3 protein.
          Length = 763

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +3

Query: 69  FGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRV 248
           FG L H  G       LP   +    S+  + ++++G    +   R+SGGSK+   +   
Sbjct: 212 FGQLTHRGGERERRHSLPRVIIEEVRSRRGSRMSQTGSQSGSPTRRQSGGSKERSPSQPD 271

Query: 249 SH--SKRETRRRSP 284
            H  +K + R RSP
Sbjct: 272 IHIVAKPQQRWRSP 285


>AL031630-13|CAA20992.1|  814|Caenorhabditis elegans Hypothetical
           protein Y38H6C.14 protein.
          Length = 814

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = -2

Query: 464 LSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKNR*HRSPRSK 285
           ++ +RS +     S+   Q+  S +DY  PRH  +L P  RS + RV  +          
Sbjct: 71  ITQHRSSYKVTKSSSCHFQDEASPSDYQMPRH-LDLKP--RSSEVRVPVRAAPEPPREQS 127

Query: 284 WAST 273
           W+ T
Sbjct: 128 WSQT 131



 Score = 27.1 bits (57), Expect = 8.6
 Identities = 22/70 (31%), Positives = 33/70 (47%)
 Frame = -2

Query: 446 QHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKNR*HRSPRSKWASTSR 267
           Q  AAL    PRQ+  ++  +  PRH++       SR       +   ++PR + +S SR
Sbjct: 187 QSVAALSGQNPRQQVHATPSHQIPRHQSS-RTHQNSRQQVPSATSSTLQNPRHRTSSASR 245

Query: 266 LAF*MRNATS 237
                RNATS
Sbjct: 246 -HHSTRNATS 254


>L37867-1|AAA63155.1|  319|Caenorhabditis elegans homeodomain
           protein protein.
          Length = 319

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -3

Query: 181 LPDSARLASALEAFRHNPADGSFXXXXXXXXX*TKCPKLRFLS 53
           LPD + ++S+L    HNP   ++          TK PKL  LS
Sbjct: 37  LPDDS-ISSSLAPLTHNPYAFNYSIPLPPTDITTKLPKLELLS 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,662,523
Number of Sequences: 27780
Number of extensions: 246202
Number of successful extensions: 790
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)