Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0845
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 33 0.043
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 31 0.13
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc... 31 0.18
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 31 0.23
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S... 30 0.31
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 29 0.71
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 29 0.94
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 29 0.94
SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyc... 28 1.2
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 28 1.6
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy... 28 1.6
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 28 1.6
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc... 27 2.2
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 27 2.2
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 27 2.2
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 27 2.9
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 27 2.9
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 27 2.9
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 27 3.8
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos... 27 3.8
SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr ... 27 3.8
SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po... 27 3.8
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 27 3.8
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 27 3.8
SPAC1782.03 |||microfibrillar-associated protein family protein|... 26 5.0
SPBC216.06c |swi1||replication fork protection complex subunit S... 26 5.0
SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|... 26 5.0
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 26 6.6
SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1 |Schizosaccharo... 26 6.6
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 26 6.6
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c... 25 8.7
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc... 25 8.7
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 25 8.7
SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit Snu23|... 25 8.7
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 25 8.7
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 25 8.7
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 33.1 bits (72), Expect = 0.043
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Frame = +3
Query: 390 IVDSEQEKKREEDLWAKFLEGTDSKPKPVLKEKSVDLVTNPERSSNNTVNYKKTNDD--D 563
I+ + E++ DL FL G D + + + ++ E N ++ N D D
Sbjct: 122 IITNIPEEEDSSDLENDFLYGADEFSSDEEEMDDISVTSSEEEEEENGARIEELNSDEED 181
Query: 564 AKEKERRIFEFAGEKIVVENNVIKERLKVDE 656
A++ E I E K V K++LK +E
Sbjct: 182 AEQAEEEILEKPVPKDEVAEKHSKDKLKKEE 212
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 31.5 bits (68), Expect = 0.13
Identities = 33/149 (22%), Positives = 64/149 (42%), Gaps = 1/149 (0%)
Frame = +3
Query: 300 EKINKVKKSRKSQNDTIIQVTSEKDKTPEPIVDSEQEKKREEDLWAKFLEGTDSKPKPVL 479
EK+ K + +Q EK++ + + + +KK++ +L KFL+ D K + L
Sbjct: 89 EKLRPYSKYASKNIELKLQ-KKEKEEELRNLEEEKAKKKKDANLKRKFLDTLDPKAREFL 147
Query: 480 KEKSVDLVTNPERSSNNTV-NYKKTNDDDAKEKERRIFEFAGEKIVVENNVIKERLKVDE 656
K S ++N N V + + TN +++ ++ E + IK + D
Sbjct: 148 KLSS--SISNSRSWENEEVFDTEITNPVIPADEDDDEYQDLPAAKRHEGDSIKS-TEHDS 204
Query: 657 TSMEAIKSDGSQNQTSDITAQSSSSANPG 743
T + DG + +S++ + S A G
Sbjct: 205 TLDSGVVIDGREKSSSELHEEESEQAAEG 233
>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 677
Score = 31.1 bits (67), Expect = 0.18
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 462 KPKPVLKEKSVDLVTNPERSSNNTVNYKKTNDDDAKEKERRIFE 593
+P PVL+ ++ D +NP + + N+KK N K + RR+ E
Sbjct: 591 EPSPVLRLRTRD--SNPSNTDSRESNHKKYNHFHQKSQTRRVME 632
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 30.7 bits (66), Expect = 0.23
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 131 GNFLFVIIMSSGSESDEDY-VPGEPEKLSEEESADDETEKQYEHE 262
GNFL ESDEDY + E L E S D+E+E++ E E
Sbjct: 119 GNFLVDEEDEEEEESDEDYDLSPTEEDLVETVSGDEESEEESESE 163
>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 30.3 bits (65), Expect = 0.31
Identities = 22/77 (28%), Positives = 39/77 (50%)
Frame = +3
Query: 354 QVTSEKDKTPEPIVDSEQEKKREEDLWAKFLEGTDSKPKPVLKEKSVDLVTNPERSSNNT 533
+ S K K+ E + S++++K+ E AK E DSK + V +K V + P++ S
Sbjct: 271 ETASSKRKSDEESLPSQKKQKKVEV--AK--ESKDSKQQNVSDKKQVTVKEVPKKLSVKN 326
Query: 534 VNYKKTNDDDAKEKERR 584
D+D+K K+ +
Sbjct: 327 AAKTTNRDEDSKGKKAK 343
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 29.1 bits (62), Expect = 0.71
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 149 IIMSSGSESDEDYVPGEPEKLSEEES-ADDETEKQYEHEVEGK 274
+ S SESD + E E SEE+S DE+E + E E E +
Sbjct: 75 VAASEDSESDSESSEEEEETESEEDSEVSDESESESESESESE 117
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 28.7 bits (61), Expect = 0.94
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +2
Query: 158 SSGSESDEDYVPGEPEKL-SEEESADDETEKQYEHEVEGK 274
+S E ++++V E + +E+ SAD E+E++ + EGK
Sbjct: 197 ASSEEENKEFVSDEGHSIVTEDASADSESEEEVDGHSEGK 236
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 28.7 bits (61), Expect = 0.94
Identities = 20/71 (28%), Positives = 39/71 (54%)
Frame = +2
Query: 53 LIDKI*CINTT*INKSFKYCS*KNKLGNFLFVIIMSSGSESDEDYVPGEPEKLSEEESAD 232
L++KI IN++ +KSF+ S KLG + + S S S + + + ++ E+ D
Sbjct: 1458 LMEKIESINSSLDDKSFELASAVEKLG---ALQKLHSESLSLMENIKSQLQEAKEKIQVD 1514
Query: 233 DETEKQYEHEV 265
+ T ++ +HE+
Sbjct: 1515 ESTIQELDHEI 1525
>SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 146
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/55 (23%), Positives = 30/55 (54%)
Frame = +3
Query: 408 EKKREEDLWAKFLEGTDSKPKPVLKEKSVDLVTNPERSSNNTVNYKKTNDDDAKE 572
E+ +ED F++GT ++P K++ +++ +S+ V Y ++D+ +E
Sbjct: 30 EQAVKEDPIVLFMKGTPTRPMCGFSLKAIQILSLENVASDKLVTYNVLSNDELRE 84
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 27.9 bits (59), Expect = 1.6
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +3
Query: 612 VVENNVIKERLKVDETSMEAIKSDGSQNQTSDITAQSSSSANPG 743
V E N KE DET E K+D S + T++ AQ S + + G
Sbjct: 146 VPETNCHKESPLSDETVSETSKNDTSNSPTNENQAQPSIAWSEG 189
>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 537
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 440 LRPQIFFSFFLLFRVNYWFRCFIFF*CNLYYCI 342
L Q+F FF+LF ++ C FF L CI
Sbjct: 132 LARQVFRQFFVLFSSDFLMICLSFFSYGLQVCI 164
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 27.9 bits (59), Expect = 1.6
Identities = 19/95 (20%), Positives = 45/95 (47%)
Frame = +3
Query: 300 EKINKVKKSRKSQNDTIIQVTSEKDKTPEPIVDSEQEKKREEDLWAKFLEGTDSKPKPVL 479
E+ + K++ + Q+ TSE + + + +++R + L + +++ KPV
Sbjct: 39 EEFVEEKEASQVQSTKSKIATSESEDVTLKNIAKKNKRERNDKLIPQQSNESEAIEKPVQ 98
Query: 480 KEKSVDLVTNPERSSNNTVNYKKTNDDDAKEKERR 584
V+L TN SN++V + + A+ +++
Sbjct: 99 STTEVELKTNELAESNSSVAVEGDENSYAETPKKK 133
>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
Mus81|Schizosaccharomyces pombe|chr 3|||Manual
Length = 608
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 357 VTSEKDKTPEPIVDSEQEKKREEDLWAKFLEGTDSKPKPVLKEKSVDLVT 506
V + + E ++D E+KR +DL A +G + K LK+ + VT
Sbjct: 373 VARDMESGQEVVLDFVVERKRYDDLVASIKDGRFHEQKARLKKSGIRSVT 422
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 2.2
Identities = 27/115 (23%), Positives = 56/115 (48%), Gaps = 1/115 (0%)
Frame = +3
Query: 300 EKINKVKKSRKSQNDTIIQVTSEKDKTPEPIVDSEQEKKREEDLWAKFLEGTDSKPKPVL 479
+ ++K K+S + Q + + K TP E KKR+ED K E T ++PK
Sbjct: 433 QPVSKPKESAEEQKPS--KEPEVKPTTPSASKVEEPSKKRDEDNHQK--EETVTQPK--- 485
Query: 480 KEKSVDLVTNPERSSNNTVNYKKTNDDDAKEKERRIFEFAGEKI-VVENNVIKER 641
+EK+ + P+ +S+ + + ++EK+ + + A + + E+ ++E+
Sbjct: 486 REKTPVEKSFPKPASSPVTFSEDVKKEPSEEKKLEVSDEAPKAAPLAESKKVEEK 540
>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +3
Query: 345 TIIQVTSEKDKTPEPIVDSEQEKKREEDLWAKFLEGTDSKPKPVLKEKSVDL 500
T QV SE TP + +E + DLW + +EG P + + +++
Sbjct: 524 TSTQVISEGQGTPFEVALLVKEMLQALDLWCEVIEGYLKSPDDIYYTRDINI 575
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 27.1 bits (57), Expect = 2.9
Identities = 20/88 (22%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Frame = +3
Query: 480 KEKSVDLVTNPERSSNNTVNYKKTNDDDAKEKERRIFEFAGEKIVVENNVIKERLKVDET 659
K++ +D+ E+S K+ N++ ++ R + G ++V + IKE ++ +
Sbjct: 122 KQEHLDIKKRLEKSDETVCKLKEENEN-LQDMLRNV----GNELVESRDEIKELIEKQKV 176
Query: 660 SMEAIKSDGSQ---NQTSDITAQSSSSA 734
E++KS S+ +S+I ++SS +
Sbjct: 177 QKESVKSHESELSSVMSSEILPKASSDS 204
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +2
Query: 122 NKLGNFLFVIIMSSGSESDEDYVPGEPEKLSEEESADDETE 244
N+ G + F +M+ +DEDY+P + E + +SA ++ +
Sbjct: 546 NEDGIYNFDRLMAKDHPNDEDYLPEKTETIEWNQSAIEQLQ 586
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 27.1 bits (57), Expect = 2.9
Identities = 34/150 (22%), Positives = 68/150 (45%), Gaps = 6/150 (4%)
Frame = +3
Query: 300 EKINKVKKSRKSQNDTIIQVTSEKDKTPEPIVDSEQEKKREEDLWAKFLEGTDSKPKPVL 479
EK+N+ + ND + + E+D+ PI + +Q ++R E L + P+
Sbjct: 655 EKVNEHESLLSRTNDILSTLRKERDEKLIPIHEWQQLQERIEH-QTLLLRQREKVPEQFA 713
Query: 480 K--EKSVDLVTNPERSSNNTVNYKKTNDDDAKEKERRIFEFAGEKIVVENNVIKERLKVD 653
EK+ D+ + N+V K N A ++ G ++ NVI+ + K++
Sbjct: 714 AEIEKNEDIRKENFEALMNSVLKVKENSIKATNNFEKML---GSRL----NVIEAKYKLE 766
Query: 654 ETSMEAIKSDGS----QNQTSDITAQSSSS 731
+ M+A + + Q++ DIT + +S+
Sbjct: 767 KHEMDANQVNARLTEVQDRLKDITDKLASA 796
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 26.6 bits (56), Expect = 3.8
Identities = 26/129 (20%), Positives = 62/129 (48%), Gaps = 4/129 (3%)
Frame = +3
Query: 300 EKINKVKKSRKSQNDTIIQVTSEKDKTPEPIVDSEQEKKREEDLWAKFLEGTDSKPKPVL 479
E++ +K + SQ DT+ +T E+D + + +++ E A FL+ + +
Sbjct: 473 EEMKCLKDEQLSQFDTVFSLTDERDGLQKDLKNTKGNLDDEIGRSA-FLKSQIRDQELTI 531
Query: 480 KE--KSVDLVTNPERSSNNTVNYK--KTNDDDAKEKERRIFEFAGEKIVVENNVIKERLK 647
++ S++ ++ S ++ K + N ++K E R K EN ++K++L+
Sbjct: 532 EKLHDSLETLSQTNNSLQCEISEKNAELNSVNSKLSEGRAHLETANK---ENEILKQQLE 588
Query: 648 VDETSMEAI 674
+ E+ + ++
Sbjct: 589 LSESKLASL 597
>SPAC15A10.13 |ppk3||serine/threonine protein kinase
Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 637
Score = 26.6 bits (56), Expect = 3.8
Identities = 18/79 (22%), Positives = 33/79 (41%)
Frame = +3
Query: 432 WAKFLEGTDSKPKPVLKEKSVDLVTNPERSSNNTVNYKKTNDDDAKEKERRIFEFAGEKI 611
W+KF+ + + P P S+D+ N+T K+ + K R + K
Sbjct: 550 WSKFIHSSSASPSP-----SIDMKKESLELKNDTTEIKEKKN----SKSRVVGNTENSKD 600
Query: 612 VVENNVIKERLKVDETSME 668
N + + ++DE+ ME
Sbjct: 601 EFNNPLFETEEQIDESWME 619
>SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 240
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +2
Query: 167 SESDEDYVPGEPEKLSEEESADDETEKQ 250
S D D+V E E LSEEE + E EKQ
Sbjct: 196 SHIDHDFVIPEDEMLSEEE--EQEVEKQ 221
>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 412
Score = 26.6 bits (56), Expect = 3.8
Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Frame = +3
Query: 363 SEKDKTPEPIVDSEQEKKREEDLWAKFLEGTDSKPKPVLKEKSVDLVTNPERSSNNTVNY 542
S D PE V + R ++ +A L ++ ++++ D PE++ +
Sbjct: 178 SSTDVVPESEVSFQTISSRVDNFFAAPLPSEQAEE--LIED---DYAEQPEQAVGQPIEQ 232
Query: 543 KKTNDDDAKEKER---RIFEFAGEKIVVENNVIKERLKVDETSMEA 671
+ +DD+A++ R R +F E +E ++E ETS+ A
Sbjct: 233 QSISDDEARQTNRPLNRGIQFLNES-EIEGQHVEEPALPSETSVPA 277
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 26.6 bits (56), Expect = 3.8
Identities = 29/138 (21%), Positives = 66/138 (47%), Gaps = 13/138 (9%)
Frame = +3
Query: 351 IQVTSEKDKT--PEPIVDSEQEKK-REEDLWAKFLEGTDSKPKPVLKEKSVDLVTNPER- 518
I+ E+D T E I+D E+ + EE+L + E D+ P+PV+ K + + P+
Sbjct: 53 IEEALEEDDTNYEEDIIDDEESAQVDEEELEEEEEEEEDATPEPVVTSKK-NSRSKPKNG 111
Query: 519 -SSNNTVNYKKTNDDDAK--EKERRIFEFAGEKIVVENNV------IKERLKVDETSMEA 671
+S + + D+D++ E + F+ K + N + + R+ + +++
Sbjct: 112 GASKRKASRRTVVDEDSENLEGDEEDGSFSDLKDLYSNPMPAQTTPVSMRMTKRQRAIQG 171
Query: 672 IKSDGSQNQTSDITAQSS 725
I +G +++ ++ ++S
Sbjct: 172 ILEEGEEDELLELPPETS 189
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 303 KINKVKKSRKSQNDTIIQVTSEKDKTPEPIVDSEQEKKREEDL 431
K + + +K Q++ + S EP+VDSE E+ EEDL
Sbjct: 100 KFQRNSRIKKLQSEDASSIASSTLSMGEPVVDSEIEE--EEDL 140
>SPAC1782.03 |||microfibrillar-associated protein family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 355
Score = 26.2 bits (55), Expect = 5.0
Identities = 26/134 (19%), Positives = 56/134 (41%)
Frame = +3
Query: 300 EKINKVKKSRKSQNDTIIQVTSEKDKTPEPIVDSEQEKKREEDLWAKFLEGTDSKPKPVL 479
E I++ K S QN +Q E S + ++ + +DS+ + L
Sbjct: 61 EGISETKTSSNFQNINPVQTIDNSASEYETDASSAEGGSNSAASSSEEEDSSDSEYEMEL 120
Query: 480 KEKSVDLVTNPERSSNNTVNYKKTNDDDAKEKERRIFEFAGEKIVVENNVIKERLKVDET 659
+ ++ L+ P+ +S N K N++D + ++ + E+ + ++KE +E
Sbjct: 121 RRRT--LLLPPKFTSKVIKNRAKANEEDTEVLKKVTSQKILEETIKRELLLKETKNNNEL 178
Query: 660 SMEAIKSDGSQNQT 701
+ +DG Q+
Sbjct: 179 LNDIDDTDGIDPQS 192
>SPBC216.06c |swi1||replication fork protection complex subunit
Swi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 971
Score = 26.2 bits (55), Expect = 5.0
Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Frame = +3
Query: 324 SRKSQNDTIIQVTSEKDKTPEPIVDSEQEKKREEDL-WAKFLEGTDSKPKPVLKEKSVDL 500
+R+ + I +K KT E I+D KK+E L AK++ +D + + +
Sbjct: 873 NRREALNKITDRKRKKMKTNETIIDHTTRKKKENHLRSAKYIVDSDDDSETDIAFFQSEA 932
Query: 501 VTNPERSSNNTVNYKKTNDDDAKEKERRI 587
+ + + +K+ +D + + K + I
Sbjct: 933 ALREKNAQKASALFKRIDDLEMEGKLQEI 961
>SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 162
Score = 26.2 bits (55), Expect = 5.0
Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Frame = +3
Query: 480 KEKSVDLVTNPERSSN-NTVNYKKTN-DDDAKEKERRIFEFAGEKIVVENNVIKERLKVD 653
++K++D + E SN T+ + + D + E R F+ EK+ ++++ + LK+
Sbjct: 59 QKKAIDAIQEEEWKSNAKTIKDSQGSLDSNLLSAEFRSFQ---EKLEKQSSINDKELKIK 115
Query: 654 ETSMEAIKSD 683
+E+I+SD
Sbjct: 116 LKEVESIRSD 125
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 25.8 bits (54), Expect = 6.6
Identities = 23/146 (15%), Positives = 51/146 (34%)
Frame = +3
Query: 300 EKINKVKKSRKSQNDTIIQVTSEKDKTPEPIVDSEQEKKREEDLWAKFLEGTDSKPKPVL 479
E + +S S D +S ++ DS+ + EG+DS
Sbjct: 111 ESDSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSS 170
Query: 480 KEKSVDLVTNPERSSNNTVNYKKTNDDDAKEKERRIFEFAGEKIVVENNVIKERLKVDET 659
E N SS++ + +++D E +++ + + +
Sbjct: 171 SESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESS 230
Query: 660 SMEAIKSDGSQNQTSDITAQSSSSAN 737
S + S S + S+ +++ S S++
Sbjct: 231 SEDNDSSSSSSDSESESSSEDSDSSS 256
>SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 325
Score = 25.8 bits (54), Expect = 6.6
Identities = 27/104 (25%), Positives = 43/104 (41%)
Frame = +3
Query: 351 IQVTSEKDKTPEPIVDSEQEKKREEDLWAKFLEGTDSKPKPVLKEKSVDLVTNPERSSNN 530
+ V S K K + E E+ REE G K K +S++ SNN
Sbjct: 21 LSVKSHKRKRSFDDENLELEESREETSG-----GILKKAKTQSFSESLERFRFAHAGSNN 75
Query: 531 TVNYKKTNDDDAKEKERRIFEFAGEKIVVENNVIKERLKVDETS 662
Y+KT+ + + + + A E I +EN + R+ V + S
Sbjct: 76 --EYRKTDVVKNSDTDNGLLKSAVETITLENGLRNRRVNVTKKS 117
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/43 (23%), Positives = 22/43 (51%)
Frame = +2
Query: 149 IIMSSGSESDEDYVPGEPEKLSEEESADDETEKQYEHEVEGKI 277
+++ +G + P + E ++D+ E Q EH+V+G +
Sbjct: 770 VVVGTGFNFPDQDAPDSGRLMVFEMTSDNNIEMQAEHKVQGSV 812
>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 559
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = -2
Query: 449 FKKLRPQIFFSFFLLFRVNYWFRCF---IFF*CNL 354
F +RP+ FFL+ ++ + CF IF CN+
Sbjct: 212 FHLIRPEYLQRFFLIKSISTYIACFAMLIFLLCNV 246
>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 585
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 161 SGSESDEDYVPGEPEKLSEEESADDETEKQYEHEVE 268
S S E+++ EPEK ++++ + E Y EVE
Sbjct: 13 SESYPPENFISNEPEKSKDKDNFNGEEVISYVGEVE 48
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 318 KKSRKSQNDTIIQVTSEKDKTPEPIVDSEQEKKRE 422
KKS KS +D I Q P+ V + E K+E
Sbjct: 450 KKSTKSSSDNIAQSGPRSSYFPKKTVSPKPEAKKE 484
>SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit
Snu23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 197 EPEKLSEEESADDETEKQYEHEVEGK 274
EPEK SEE S + E+ Y E+E K
Sbjct: 88 EPEKGSEEYSLKERVER-YHQELEAK 112
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 25.4 bits (53), Expect = 8.7
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +2
Query: 119 KNKLGNFLFVIIMSSGSESDEDYV 190
+++ GN++ I+ +GSESD+ Y+
Sbjct: 586 QDQYGNYVVQHILRTGSESDKKYI 609
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 459 SKPKPVLKEKSVDLVTNPERSSNNTVNYKKTNDDDAK 569
S+P+P L++ L P R ++ KKT+D A+
Sbjct: 818 SRPRPNLQKPLPQLHIEPSRDEQYSMERKKTDDSLAE 854
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,409,220
Number of Sequences: 5004
Number of extensions: 43881
Number of successful extensions: 258
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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