Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0844
(730 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces ... 35 0.010
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 32 0.073
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.90
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo... 28 1.6
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 27 3.6
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 26 4.8
SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr ... 26 4.8
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 26 6.3
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch... 26 6.3
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 26 6.3
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 25 8.4
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 25 8.4
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual 25 8.4
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 8.4
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch... 25 8.4
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual 25 8.4
>SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 87
Score = 35.1 bits (77), Expect = 0.010
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +2
Query: 185 PIQPINTYPQNNYAPPQNSYYPQNTYAPPQ 274
P P Y NY PPQ + YPQ YAPPQ
Sbjct: 14 PAPPQQAYGGPNYYPPQQN-YPQQGYAPPQ 42
Score = 34.3 bits (75), Expect = 0.018
Identities = 18/43 (41%), Positives = 19/43 (44%)
Frame = +2
Query: 155 PQNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQNTY 283
PQ + P P YPQ YAPPQ YPQ Y Q Y
Sbjct: 17 PQQAYGGP-NYYPPQQNYPQQGYAPPQG--YPQGGYPAQQPMY 56
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 32.3 bits (70), Expect = 0.073
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +2
Query: 167 WNAPPKPIQPINTYPQN-NYAPPQNSYYP-QNTYAPP 271
+ A P+P P YPQ Y P Q +YYP Q YA P
Sbjct: 96 YGAAPQPYPPQGGYPQQPYYYPNQPNYYPAQPAYAQP 132
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 662 PQHVYYSTQAPIYYPTQAPTY 724
PQ YY P YYP Q P Y
Sbjct: 110 PQQPYYYPNQPNYYPAQ-PAY 129
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.7 bits (61), Expect = 0.90
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 137 PPIQWKPQNTWNAPPKPIQPINTYPQNN 220
P Q + +APP P+QP+N P +N
Sbjct: 1365 PKPQIPDSSNVHAPPPPVQPMNAMPSHN 1392
>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 27.9 bits (59), Expect = 1.6
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +1
Query: 133 EPAYPVETSKYVERSTQADPADKHLSPKQLRPPSKLILSSEYLCTSSKHLSSHLEHAFIS 312
EP+ P+E ER+ +P++ S + R K +S L ++H+S+ +
Sbjct: 666 EPSNPIE-----ERNEDIEPSEASTSVSKKRKQKKKKKNSGKLTIEAEHVSNDSPIINEA 720
Query: 313 DFDYNNSR 336
FDY N +
Sbjct: 721 PFDYKNQK 728
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 26.6 bits (56), Expect = 3.6
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 509 FPISSSVRVPALFHQACLFCIGIREVAFLAYVCSIGDLILVFVTA 375
F ISSS+R P + H L G + + +CS GDL + + A
Sbjct: 406 FCISSSLRHPNVIHTLDLIQDGKGDYCEVMELCSGGDLYTLIMAA 450
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 26.2 bits (55), Expect = 4.8
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +2
Query: 155 PQNTWNAPPKPIQPINTY--PQNNYAPPQNSYYPQNTYAPP 271
P + +N P Q Y PQ++YAPP S P+ +Y P
Sbjct: 99 PSSNYNTAKPPYQTSQFYARPQSSYAPPP-SGRPRISYPYP 138
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/48 (27%), Positives = 20/48 (41%)
Frame = +2
Query: 140 PIQWKPQNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQNTY 283
P +P N+W + P +NY + Y YA PQ++Y
Sbjct: 77 PTSQRP-NSWQPGNASTMYASPPPSSNYNTAKPPYQTSQFYARPQSSY 123
>SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 364
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +1
Query: 166 VERSTQADPADKHLSPKQLRPPSKLILSSEYLCTSSKHLSSHLEHAFI 309
+ER ++ + K+LSP SK+ +SS+Y + ++ +L I
Sbjct: 43 IERRSKRESLSKNLSPNDNSHNSKIDISSDYQLLNEYKVAYYLRPGII 90
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 25.8 bits (54), Expect = 6.3
Identities = 21/70 (30%), Positives = 26/70 (37%)
Frame = +3
Query: 471 KKGWYSYTGADGKVYTVHYWADKTGYHAYGDHLPTPPXVPAAIQAALDQNXXXXXXXXXX 650
KK W + + G T+ A H Y PTP V I AALD
Sbjct: 1221 KKSWKNISNLSGGEKTLSSLALVFALHNYK---PTPLYVMDEIDAALDFKNVSIVANYIK 1277
Query: 651 XRTSHNTFII 680
RT + FI+
Sbjct: 1278 ERTKNAQFIV 1287
>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
subfamily|Schizosaccharomyces pombe|chr 1|||Manual
Length = 887
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 309 IRLRLQQLPSQ*SRMKCIXGDNGSYKYEYQIADGTHVG 422
I+LR++ + K I G S Y+Y + G H+G
Sbjct: 71 IKLRIEAILGNSEASKLISGTFHSIAYKYLVKYGKHIG 108
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 197 INTYPQNNYAPPQNSYYPQNTYA 265
IN P+ + PP +SY+P+ +A
Sbjct: 60 INNDPKVRFLPPVDSYHPKRNHA 82
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 25.4 bits (53), Expect = 8.4
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Frame = +2
Query: 173 APPKPIQPINTYP--QNNYAPPQNSYYPQNTYAPPQNTY 283
A P P P YP ++ APP Y Q Y P Q Y
Sbjct: 204 AQPPPPPPQQNYPPAASSSAPPMQ--YQQTAYPPQQAPY 240
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 25.4 bits (53), Expect = 8.4
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +3
Query: 360 IXGDNGSYKYEYQIADGTHVGEEGYFTNPNTEE-ASLVKKGWYSYTGADGKVYTVHY 527
I G+N SY YQI + H E F+ ++ SL K+ ++ +DG + + Y
Sbjct: 148 INGENTSYSPLYQIDEPYHSDEPYAFSFSRSDTLRSLYKQVMEAFQISDGTSFRLWY 204
>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 222 TPPLKTHTILRIPMHLLKTPIVPPGARLHIRLRLQQLP 335
T KT+T+L+ P H++ A + I +LQQLP
Sbjct: 172 TDAYKTYTMLKYPAHIVAV------ASISIACKLQQLP 203
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 137 PPIQWKPQNTWNAPPKPIQPINTYPQNN 220
PP + N+PP+PI P++ P N
Sbjct: 258 PPSNGTVSSPPNSPPRPIAPVSMNPAIN 285
>SPBC9B6.11c |||CCR4/nocturin family
endoribonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 502
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 155 PQNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNTYAP 268
P++T + P K I + QN+Y P S+Y Q+ P
Sbjct: 370 PESTASTPKKRILHV----QNDYVPHYRSFYQQHEQNP 403
>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 25.4 bits (53), Expect = 8.4
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = +2
Query: 161 NTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNT---YAPPQ 274
N +N P P NTY + NY+ P N NT Y PP+
Sbjct: 6 NPYNGGQYP--PYNTYTRPNYS-PNNGSQSNNTVHQYQPPR 43
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,932,850
Number of Sequences: 5004
Number of extensions: 62554
Number of successful extensions: 227
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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