Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0842
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    29   0.048
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    28   0.084
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    28   0.084
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    27   0.19 
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    23   3.2  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    22   4.2  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    21   7.3  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   7.3  

>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 28.7 bits (61), Expect = 0.048
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -1

Query: 433 AKVGAQDGLAGLLVRQRDVDELVQTAGTQDGRVDDVRS 320
           AK    +GLAG+ V   D D+ + + GT+D  +  +++
Sbjct: 326 AKYAKDNGLAGVAVWSIDTDDFLGSCGTKDALLQAIKN 363


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 27.9 bits (59), Expect = 0.084
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 11/70 (15%)
 Frame = +1

Query: 262 HRDGRHGRQEERLHHRCHKQTGH-----------HRPGHPASRPSGPAHLHPAAGREVPR 408
           H  G H +++   HH+ H Q  H           H+ G P  +P  P    P  G++ P 
Sbjct: 165 HHMGHHMQEQHPQHHQPHHQQQHMMYGGQQGANMHQQGPPHQQP--PIQQQPNQGQQPPG 222

Query: 409 GHPARQPSQI 438
              A  PS +
Sbjct: 223 NTAAALPSPL 232



 Score = 22.6 bits (46), Expect(2) = 0.45
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 514 DMPASLQAGHSPGHRGGDPSREESP 588
           D    L+ G  P H GG PS  + P
Sbjct: 51  DPSVGLRQGIPPHHYGGPPSGGQPP 75



 Score = 21.0 bits (42), Expect(2) = 0.45
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +1

Query: 334 RPGHPASRPSGPAHLHPAAGREVPRGHPARQP 429
           R G   S      H H  A  +VP+G  A QP
Sbjct: 14  RNGGVVSAEHPHQHQHYGAAVQVPQGGGAVQP 45


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 0.084
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 11/70 (15%)
 Frame = +1

Query: 262 HRDGRHGRQEERLHHRCHKQTGH-----------HRPGHPASRPSGPAHLHPAAGREVPR 408
           H  G H +++   HH+ H Q  H           H+ G P  +P  P    P  G++ P 
Sbjct: 167 HHMGHHMQEQHPQHHQPHHQQQHMMYGGQQGANMHQQGPPHQQP--PIQQQPNQGQQPPG 224

Query: 409 GHPARQPSQI 438
              A  PS +
Sbjct: 225 NTAAALPSPL 234


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
 Frame = -2

Query: 282 PMPSISVRIWLMTRSAAP-PASDTEPPRDLAMESSSSKNNTHGDADRALSKMSRTFASDS 106
           P P +    W+  +   P P     PP +    SSSS   +   A R+    S T +  S
Sbjct: 190 PQPVLPTYKWMQVKRNVPKPTVPKIPPAEFPTTSSSSALESPNPASRSSCLGSNTSSMLS 249

Query: 105 PNHMVSSSGPFTDIKL 58
            N + +    FT+ +L
Sbjct: 250 LNCLNTGRTNFTNKQL 265


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -1

Query: 433 AKVGAQDGLAGLLVRQRDVDELVQTAGTQD 344
           A+    + LAG+++   + D+L  T GT++
Sbjct: 335 AQYAKDNNLAGVMIWSIETDDLHATCGTKN 364


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 346 DGRVDDVRSVCGTDDEDVL 290
           D  +DD +  CG D  D+L
Sbjct: 414 DLSLDDFKGTCGRDKYDIL 432


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/29 (24%), Positives = 19/29 (65%)
 Frame = -1

Query: 409 LAGLLVRQRDVDELVQTAGTQDGRVDDVR 323
           +AGL++   D+D+ +   G ++G ++ ++
Sbjct: 346 MAGLMIWTVDMDDFLGLCGPKNGLLEVIK 374


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 105 PNHMVSSSGPFTDI 64
           P++ +SSSGPF+ I
Sbjct: 78  PSNGLSSSGPFSSI 91


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,812
Number of Sequences: 336
Number of extensions: 3078
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)