Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0842
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    27   0.13 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   3.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.7  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   4.9  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 18/59 (30%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
 Frame = +1

Query: 253 PDPHRDGR-HGRQEERL---HHRCHKQTGHHRPGHPASRPSGPAHLHPAAGREVPRGHP 417
           P PH     HG         HH  H  T HH+   P +  S PA +        P  HP
Sbjct: 412 PGPHHHTMGHGHSHIHATPHHHHSHAATPHHQHSTPLAHSSYPAAIQIG---HTPHHHP 467



 Score = 23.4 bits (48), Expect = 2.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 520 PASLQAGHSPGHRGGDP 570
           PA++Q GH+P H    P
Sbjct: 454 PAAIQIGHTPHHHPHPP 470


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 289 EERLHHRCHKQTGHHRP 339
           E ++HH+ H Q  H +P
Sbjct: 165 ESQMHHQMHTQHPHMQP 181



 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +3

Query: 558 RRRSIARGVASSKPPLPLWTW 620
           ++++  +G AS+  P PL+ W
Sbjct: 243 QQQAAPQGAASANLPSPLYPW 263


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/41 (21%), Positives = 17/41 (41%)
 Frame = +1

Query: 313 HKQTGHHRPGHPASRPSGPAHLHPAAGREVPRGHPARQPSQ 435
           H+Q  HH+  HP ++            ++ P+    +Q  Q
Sbjct: 811 HQQLHHHQSTHPQAQAQAQPQQQQQQQQQQPQQQQQQQQQQ 851



 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 545 EWPACRLAGISPSGQRH*SLASPWRCKTSQ 456
           EWP    A I P  Q+  + A+P++   +Q
Sbjct: 751 EWPGLEHANIGPYIQKMIAAAAPFKGMETQ 780


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/29 (24%), Positives = 11/29 (37%)
 Frame = +1

Query: 247 HQPDPHRDGRHGRQEERLHHRCHKQTGHH 333
           H    H   RH  + +  ++  H    HH
Sbjct: 424 HYNHNHNQARHSSKSDNQNNNQHNDQAHH 452


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,733
Number of Sequences: 438
Number of extensions: 3588
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)