Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0840
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr ...    27   1.5  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    27   2.7  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    26   4.7  
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi...    25   6.2  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    25   8.3  

>SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 247

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +1

Query: 436 AYGRSYSPKYLKFIDTLDSPMDDKN 510
           AY R++   Y +F+D++DS  +++N
Sbjct: 81  AYTRAFLKSYFRFLDSIDSGHNERN 105


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = -1

Query: 404 PMPPKKRIKVFTSSIDRKPRWIMYRQING---VA*YPILIAV*AXARVLSPIFSTPTGRY 234
           P+P   +I  FT  + RK +W   +QI G   +    +L++         P+ S P+GR 
Sbjct: 99  PLPNGLQIDTFTLCLYRKSKW--KKQIVGEAYIGIQALLLSTNPDETCKYPVISPPSGRN 156

Query: 233 GSSCRPS 213
             +  PS
Sbjct: 157 KENQSPS 163


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 330 PIHNPTWFSINGRSKNFNA 386
           P HNPT    NG S N+NA
Sbjct: 283 PTHNPTSSYGNGASTNYNA 301


>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
           Gap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 766

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 258 LFNSDRAIRILLSSIEVNLVESRRKH 181
           LFN D  ++I++ +I  N  ESR +H
Sbjct: 145 LFNMDALLQIVMFNIYGNQYESREEH 170


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -3

Query: 321 WSCIIPDSDSGIGRXKGPF-TNLFN-SDRAIRILLSSI 214
           W  I PD +  IGR K  F    FN  + A+ +++SS+
Sbjct: 137 WDLIFPDREFRIGRLKFNFKPGPFNVKEHALIVVMSSV 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,486,403
Number of Sequences: 5004
Number of extensions: 51433
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)