Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0840
         (590 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0256 - 19465636-19466709,19467649-19467765,19468168-194682...    30   1.6  
11_04_0475 - 18176578-18177252,18180101-18180664                       27   8.5  

>05_04_0256 - 19465636-19466709,19467649-19467765,19468168-19468279,
            19469019-19469167,19469378-19469449,19469544-19469609,
            19471945-19472073,19474539-19474647,19475225-19475304,
            19475408-19475533,19475607-19475657,19475738-19475920,
            19476019-19476105,19476184-19476294,19476692-19476796,
            19477513-19477678,19477769-19477941,19478022-19478094,
            19479472-19479655,19479759-19480203
          Length = 1203

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
 Frame = +1

Query: 193  RLYKIYFDGRQEDPYRPVGVEKIGERTLAXAYTAIRIGYYATPLICLYIIQRGFLSMEEV 372
            RL K+  +  +E   R   + K+G+ ++A  +TA     +A+    L II++G  ++  V
Sbjct: 917  RLQKMMDEMNEESDGRSAPIVKLGDASMASPFTA----KHASVAPTLDIIRQGRSTL--V 970

Query: 373  KTLMRF-FGGIGCIATVFFVMRAY 441
             TL  F   G+ C+AT + +   Y
Sbjct: 971  TTLQMFKILGLNCLATAYVLSVMY 994


>11_04_0475 - 18176578-18177252,18180101-18180664
          Length = 412

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +1

Query: 214 DGRQEDPYRPVGVEK---IGERTLAXAYTAIRIGYYATPLICL 333
           D   ED + P  + +   + E  LA + T+I I  +ATP+ CL
Sbjct: 323 DNETEDDFSPKEINQRHILHEANLAPSVTSIAIFSHATPIRCL 365


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,577,434
Number of Sequences: 37544
Number of extensions: 314301
Number of successful extensions: 711
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)