Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0840
(590 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BX511262-2|CAM45793.1| 601|Homo sapiens HLA-B associated transc... 52 2e-06
BX248244-2|CAM26084.1| 601|Homo sapiens HLA-B associated transc... 52 2e-06
BC031839-1|AAH31839.1| 558|Homo sapiens HLA-B associated transc... 52 2e-06
BA000025-23|BAB63383.1| 558|Homo sapiens BAT5 protein. 52 2e-06
AL805934-43|CAI18530.1| 558|Homo sapiens HLA-B associated trans... 52 2e-06
AL670886-34|CAI17808.2| 601|Homo sapiens HLA-B associated trans... 52 2e-06
AL662899-18|CAI18401.2| 601|Homo sapiens HLA-B associated trans... 52 2e-06
AK023194-1|BAB14455.1| 558|Homo sapiens protein ( Homo sapiens ... 52 2e-06
AF193047-1|AAG22475.1| 558|Homo sapiens unknown protein. 52 2e-06
AF129756-9|AAD18079.1| 558|Homo sapiens BAT5 protein. 52 2e-06
>BX511262-2|CAM45793.1| 601|Homo sapiens HLA-B associated
transcript 5 protein.
Length = 601
Score = 52.0 bits (119), Expect = 2e-06
Identities = 27/104 (25%), Positives = 53/104 (50%)
Frame = +1
Query: 235 YRPVGVEKIGERTLAXAYTAIRIGYYATPLICLYIIQRGFLSMEEVKTLMRFFGGIGCIA 414
Y+P +EK + LA A I YY++P Y+ ++G+LS+ +V + G + +
Sbjct: 91 YQPRALEKHADSILALASVFWSISYYSSPFAFFYLYRKGYLSLSKVVPFSHYAGTLLLLL 150
Query: 415 TVFFVMRAYGRSYSPKYLKFIDTLDSPMDDKNAYPEGDQGNTDF 546
+R GR +P+Y +FI L++ ++++ + N +F
Sbjct: 151 AGVACLRGIGRWTNPQYRQFITILEATHRNQSSENKRQLANYNF 194
>BX248244-2|CAM26084.1| 601|Homo sapiens HLA-B associated
transcript 5 protein.
Length = 601
Score = 52.0 bits (119), Expect = 2e-06
Identities = 27/104 (25%), Positives = 53/104 (50%)
Frame = +1
Query: 235 YRPVGVEKIGERTLAXAYTAIRIGYYATPLICLYIIQRGFLSMEEVKTLMRFFGGIGCIA 414
Y+P +EK + LA A I YY++P Y+ ++G+LS+ +V + G + +
Sbjct: 91 YQPRALEKHADSILALASVFWSISYYSSPFAFFYLYRKGYLSLSKVVPFSHYAGTLLLLL 150
Query: 415 TVFFVMRAYGRSYSPKYLKFIDTLDSPMDDKNAYPEGDQGNTDF 546
+R GR +P+Y +FI L++ ++++ + N +F
Sbjct: 151 AGVACLRGIGRWTNPQYRQFITILEATHRNQSSENKRQLANYNF 194
>BC031839-1|AAH31839.1| 558|Homo sapiens HLA-B associated
transcript 5 protein.
Length = 558
Score = 52.0 bits (119), Expect = 2e-06
Identities = 27/104 (25%), Positives = 53/104 (50%)
Frame = +1
Query: 235 YRPVGVEKIGERTLAXAYTAIRIGYYATPLICLYIIQRGFLSMEEVKTLMRFFGGIGCIA 414
Y+P +EK + LA A I YY++P Y+ ++G+LS+ +V + G + +
Sbjct: 48 YQPRALEKHADSILALASVFWSISYYSSPFAFFYLYRKGYLSLSKVVPFSHYAGTLLLLL 107
Query: 415 TVFFVMRAYGRSYSPKYLKFIDTLDSPMDDKNAYPEGDQGNTDF 546
+R GR +P+Y +FI L++ ++++ + N +F
Sbjct: 108 AGVACLRGIGRWTNPQYRQFITILEATHRNQSSENKRQLANYNF 151
>BA000025-23|BAB63383.1| 558|Homo sapiens BAT5 protein.
Length = 558
Score = 52.0 bits (119), Expect = 2e-06
Identities = 27/104 (25%), Positives = 53/104 (50%)
Frame = +1
Query: 235 YRPVGVEKIGERTLAXAYTAIRIGYYATPLICLYIIQRGFLSMEEVKTLMRFFGGIGCIA 414
Y+P +EK + LA A I YY++P Y+ ++G+LS+ +V + G + +
Sbjct: 48 YQPRALEKHADSILALASVFWSISYYSSPFAFFYLYRKGYLSLSKVVPFSHYAGTLLLLL 107
Query: 415 TVFFVMRAYGRSYSPKYLKFIDTLDSPMDDKNAYPEGDQGNTDF 546
+R GR +P+Y +FI L++ ++++ + N +F
Sbjct: 108 AGVACLRGIGRWTNPQYRQFITILEATHRNQSSENKRQLANYNF 151
>AL805934-43|CAI18530.1| 558|Homo sapiens HLA-B associated
transcript 5 protein.
Length = 558
Score = 52.0 bits (119), Expect = 2e-06
Identities = 27/104 (25%), Positives = 53/104 (50%)
Frame = +1
Query: 235 YRPVGVEKIGERTLAXAYTAIRIGYYATPLICLYIIQRGFLSMEEVKTLMRFFGGIGCIA 414
Y+P +EK + LA A I YY++P Y+ ++G+LS+ +V + G + +
Sbjct: 48 YQPRALEKHADSILALASVFWSISYYSSPFAFFYLYRKGYLSLSKVVPFSHYAGTLLLLL 107
Query: 415 TVFFVMRAYGRSYSPKYLKFIDTLDSPMDDKNAYPEGDQGNTDF 546
+R GR +P+Y +FI L++ ++++ + N +F
Sbjct: 108 AGVACLRGIGRWTNPQYRQFITILEATHRNQSSENKRQLANYNF 151
>AL670886-34|CAI17808.2| 601|Homo sapiens HLA-B associated
transcript 5 protein.
Length = 601
Score = 52.0 bits (119), Expect = 2e-06
Identities = 27/104 (25%), Positives = 53/104 (50%)
Frame = +1
Query: 235 YRPVGVEKIGERTLAXAYTAIRIGYYATPLICLYIIQRGFLSMEEVKTLMRFFGGIGCIA 414
Y+P +EK + LA A I YY++P Y+ ++G+LS+ +V + G + +
Sbjct: 91 YQPRALEKHADSILALASVFWSISYYSSPFAFFYLYRKGYLSLSKVVPFSHYAGTLLLLL 150
Query: 415 TVFFVMRAYGRSYSPKYLKFIDTLDSPMDDKNAYPEGDQGNTDF 546
+R GR +P+Y +FI L++ ++++ + N +F
Sbjct: 151 AGVACLRGIGRWTNPQYRQFITILEATHRNQSSENKRQLANYNF 194
>AL662899-18|CAI18401.2| 601|Homo sapiens HLA-B associated
transcript 5 protein.
Length = 601
Score = 52.0 bits (119), Expect = 2e-06
Identities = 27/104 (25%), Positives = 53/104 (50%)
Frame = +1
Query: 235 YRPVGVEKIGERTLAXAYTAIRIGYYATPLICLYIIQRGFLSMEEVKTLMRFFGGIGCIA 414
Y+P +EK + LA A I YY++P Y+ ++G+LS+ +V + G + +
Sbjct: 91 YQPRALEKHADSILALASVFWSISYYSSPFAFFYLYRKGYLSLSKVVPFSHYAGTLLLLL 150
Query: 415 TVFFVMRAYGRSYSPKYLKFIDTLDSPMDDKNAYPEGDQGNTDF 546
+R GR +P+Y +FI L++ ++++ + N +F
Sbjct: 151 AGVACLRGIGRWTNPQYRQFITILEATHRNQSSENKRQLANYNF 194
>AK023194-1|BAB14455.1| 558|Homo sapiens protein ( Homo sapiens
cDNA FLJ13132 fis, clone NT2RP3003008. ).
Length = 558
Score = 52.0 bits (119), Expect = 2e-06
Identities = 27/104 (25%), Positives = 53/104 (50%)
Frame = +1
Query: 235 YRPVGVEKIGERTLAXAYTAIRIGYYATPLICLYIIQRGFLSMEEVKTLMRFFGGIGCIA 414
Y+P +EK + LA A I YY++P Y+ ++G+LS+ +V + G + +
Sbjct: 48 YQPRALEKHADSILALASVFWSISYYSSPFAFFYLYRKGYLSLSKVVPFSHYAGTLLLLL 107
Query: 415 TVFFVMRAYGRSYSPKYLKFIDTLDSPMDDKNAYPEGDQGNTDF 546
+R GR +P+Y +FI L++ ++++ + N +F
Sbjct: 108 AGVACLRGIGRWTNPQYRQFITILEATHRNQSSENKRQLANYNF 151
>AF193047-1|AAG22475.1| 558|Homo sapiens unknown protein.
Length = 558
Score = 52.0 bits (119), Expect = 2e-06
Identities = 27/104 (25%), Positives = 53/104 (50%)
Frame = +1
Query: 235 YRPVGVEKIGERTLAXAYTAIRIGYYATPLICLYIIQRGFLSMEEVKTLMRFFGGIGCIA 414
Y+P +EK + LA A I YY++P Y+ ++G+LS+ +V + G + +
Sbjct: 48 YQPRALEKHADSILALASVFWSISYYSSPFAFFYLYRKGYLSLSKVVPFSHYAGTLLLLL 107
Query: 415 TVFFVMRAYGRSYSPKYLKFIDTLDSPMDDKNAYPEGDQGNTDF 546
+R GR +P+Y +FI L++ ++++ + N +F
Sbjct: 108 AGVACLRGIGRWTNPQYRQFITILEATHRNQSSENKRQLANYNF 151
>AF129756-9|AAD18079.1| 558|Homo sapiens BAT5 protein.
Length = 558
Score = 52.0 bits (119), Expect = 2e-06
Identities = 27/104 (25%), Positives = 53/104 (50%)
Frame = +1
Query: 235 YRPVGVEKIGERTLAXAYTAIRIGYYATPLICLYIIQRGFLSMEEVKTLMRFFGGIGCIA 414
Y+P +EK + LA A I YY++P Y+ ++G+LS+ +V + G + +
Sbjct: 48 YQPRALEKHADSILALASVFWSISYYSSPFAFFYLYRKGYLSLSKVVPFSHYAGTLLLLL 107
Query: 415 TVFFVMRAYGRSYSPKYLKFIDTLDSPMDDKNAYPEGDQGNTDF 546
+R GR +P+Y +FI L++ ++++ + N +F
Sbjct: 108 AGVACLRGIGRWTNPQYRQFITILEATHRNQSSENKRQLANYNF 151
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,433,694
Number of Sequences: 237096
Number of extensions: 1696665
Number of successful extensions: 3085
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3085
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6211568660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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