Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0840
         (590 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13875-7|AAN63444.1|  635|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U88180-5|AAB42299.1|  340|Caenorhabditis elegans Hypothetical pr...    28   4.3  
AF098997-14|AAK71402.1|  321|Caenorhabditis elegans Serpentine r...    28   5.7  
Z82258-1|CAB05122.2|  906|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z77655-8|CAB01138.3|  402|Caenorhabditis elegans Hypothetical pr...    27   10.0 
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    27   10.0 

>U13875-7|AAN63444.1|  635|Caenorhabditis elegans Hypothetical
           protein C26E6.7b protein.
          Length = 635

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 568 TGQAGEVENRYFPDRLQDTHSCRPW 494
           TG A E+ +  FP   +DT + RPW
Sbjct: 171 TGTASEIFDMLFPANFRDTPNFRPW 195


>U88180-5|AAB42299.1|  340|Caenorhabditis elegans Hypothetical
           protein T27A3.6 protein.
          Length = 340

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +1

Query: 388 FFGGIGCIATVFFVMRAYGRSYSPKYLKFIDTLDSPMDDKN 510
           +F  +   A V  + RA  RS +   L FID  +S  DDKN
Sbjct: 143 YFVNVAFPAYVRHLERARQRSRTDSRLTFIDVSESKFDDKN 183


>AF098997-14|AAK71402.1|  321|Caenorhabditis elegans Serpentine
           receptor, class i protein32 protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 170 CGDACFLLDSTRFTSMDDKRIRIARSELKR 259
           CG A     +  F  M D + R++RS LKR
Sbjct: 205 CGGAAIFTTADMFRMMKDLQTRVSRSSLKR 234


>Z82258-1|CAB05122.2|  906|Caenorhabditis elegans Hypothetical
           protein C27H2.2a protein.
          Length = 906

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 23/65 (35%), Positives = 34/65 (52%)
 Frame = -1

Query: 506 LSSMGESKVSMNFKYFGL*DLPYARITKKTVAIQPMPPKKRIKVFTSSIDRKPRWIMYRQ 327
           L+SMG  K+ +   +  L  L     TK T+A  P PP+      T++IDRKPR ++  +
Sbjct: 265 LNSMGTIKLQLVVTWLPL--LASKSSTKPTIA--PNPPEID---GTTTIDRKPRIVLREK 317

Query: 326 INGVA 312
             G A
Sbjct: 318 KRGSA 322


>Z77655-8|CAB01138.3|  402|Caenorhabditis elegans Hypothetical
           protein C56A3.8a protein.
          Length = 402

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +2

Query: 299 ESGIMQLH*SAYT*SNVVFYQWKK*KL*CASSEASAV*LLFSS*CEHMEDLTVRN 463
           + G  QL+ + Y   N VF +W   K   +  E +   LLF   C  + D  +RN
Sbjct: 161 KEGSFQLYVNGYESGNTVFARWNYDKNLLSDEEGAKFQLLFQKMC--IVDYVIRN 213


>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
           protein F39C12.1 protein.
          Length = 5105

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 479 TLWTLPWTTRMRILKAIREIPIFDF 553
           TLWT P    M+ L  I+++P  D+
Sbjct: 354 TLWTYPAEVDMKFLAKIQDVPEIDY 378


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,587,869
Number of Sequences: 27780
Number of extensions: 281451
Number of successful extensions: 679
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)