Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0840
         (590 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    24   0.97 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   5.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.0  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   9.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.0  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 24.2 bits (50), Expect = 0.97
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = +3

Query: 267 KDPCXGLYRYQNRVLCNSIDLPIHNPTWFSINGRSKNFNALLRRHRLYSY 416
           +DP    Y++ N     S      N TW  +N   K+ N   ++   YS+
Sbjct: 419 RDPERTPYQWDNST---SAGFSQTNKTWLPVNENYKSLNLAAQKREYYSH 465


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/33 (24%), Positives = 18/33 (54%)
 Frame = -3

Query: 507 LVVHGRVQSVNEFQIFRTVRSSICSHYEENSSY 409
           + +HG VQS +++ +   V ++   ++E    Y
Sbjct: 107 VTMHGTVQSYDKYDLLENVNNAARINWEYLDKY 139


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +1

Query: 178 CMFSPRLYKIYF 213
           C++SP++Y I F
Sbjct: 754 CLYSPKIYIILF 765


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 451 YSPKYLKFIDTLDS 492
           Y PKY+K +D  +S
Sbjct: 234 YDPKYIKMMDAGES 247


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 178 CMFSPRLYKI 207
           C+FSP+LY I
Sbjct: 896 CLFSPKLYII 905


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +1

Query: 178 CMFSPRLYKIYF 213
           C++SP++Y I F
Sbjct: 844 CLYSPKIYIILF 855


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,226
Number of Sequences: 438
Number of extensions: 3640
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)