Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0840
         (590 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g31540.1 68416.m04025 hypothetical protein                          30   1.3  
At3g13230.1 68416.m01665 expressed protein                             28   4.1  
At1g14950.1 68414.m01786 major latex protein-related / MLP-relat...    28   5.4  
At3g26150.1 68416.m03262 cytochrome P450 71B16, putative (CYP71B...    27   7.1  

>At3g31540.1 68416.m04025 hypothetical protein
          Length = 699

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 206 FTSMDDKRIRIARSELKRLVKGPLXRPIPLSESG 307
           F + + K +++  SELK ++K P+  P PLS  G
Sbjct: 634 FANAEAKLVQVT-SELKEVLKAPISEPTPLSPGG 666


>At3g13230.1 68416.m01665 expressed protein
          Length = 215

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 573 RLQAKREKSKIGISLIAFRIRILVVHGRVQSVNEFQIFRTVRSSICS 433
           RL  K  K+K  I   + + RI++   R+  +  F   +  RSS+CS
Sbjct: 147 RLSGKGGKTKFAIEN-STKTRIVIADTRIHILGAFSNIKVARSSLCS 192


>At1g14950.1 68414.m01786 major latex protein-related / MLP-related
           low similarity to major latex protein {Papaver
           somniferum}[GI:294060] ; contains Pfam profile PF00407:
           Pathogenesis-related protein Bet v I family
          Length = 155

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 403 GCIATV-FFVMRAYGRSYSP-KYLKFIDTLDSPMDD 504
           GC+  V  F  + Y  S  P KY+KF+ +L + MDD
Sbjct: 111 GCVCKVTMFWEKRYEDSPEPIKYMKFVTSLAADMDD 146


>At3g26150.1 68416.m03262 cytochrome P450 71B16, putative (CYP71B16)
           identical to cytochrome P450 71B16 (SP:Q9LTM7)
           [Arabidopsis thaliana]; similar to cytochrome P450
           GB:O65784 [Arabidopsis thaliana]
          Length = 502

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 446 LPYARITKKTVAIQPMPPKKRIKVFTSSIDRKPR-WIMYRQIN 321
           LP   +T   V    +PPK+RI V T +I R P  WI   + N
Sbjct: 374 LPRETMTHIKVQGYDIPPKRRILVNTWAIGRDPTLWINPEEFN 416


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,816,213
Number of Sequences: 28952
Number of extensions: 265212
Number of successful extensions: 647
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)