Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0838
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   6.5  
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi...    25   8.7  
SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr ...    25   8.7  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    25   8.7  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 545  VMKHTSIHFSRTTGLICSNS 486
            +M +  +HF  T GL+C NS
Sbjct: 1799 LMFNELLHFKETVGLLCKNS 1818


>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -1

Query: 190 GFALDVDEDPGSRFLKEYSNEWA*ISLPCW 101
           G+ + +    G R L+ +  EW  +S  CW
Sbjct: 162 GYIISLARQVGDRSLELHRGEWNKVSSGCW 191


>SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 384

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 75  PASGDVLDWADVLHVSRVLAFTGYP 1
           P + D+LD     +VSR +AF+ YP
Sbjct: 133 PLTEDMLDELKKANVSRAVAFSQYP 157


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
 Frame = +2

Query: 2   GYPVKARTLLTWRTSAQSSTSPDAGSLPTTTRSPT----REGYLSP 127
           GYPV   T      S  +S +P     PT+  S T      GY++P
Sbjct: 601 GYPVPGYTPYMRNPSQHTSVAPSPNGTPTSGNSSTVGSPMIGYMAP 646


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,467,419
Number of Sequences: 5004
Number of extensions: 48189
Number of successful extensions: 136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)