Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0838
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0052 - 411927-412589                                             33   0.18 
04_01_0539 - 6986728-6986996,6987807-6988284,6988580-6988594,699...    31   0.71 
01_06_0887 + 32733300-32734565                                         31   0.94 
04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130...    30   1.2  
02_04_0376 - 22474473-22476947                                         29   2.2  
04_04_1267 - 32257035-32257337,32257423-32257570,32257656-322578...    29   2.9  
10_08_0421 + 17793875-17794536,17794558-17795515,17795689-17796243     27   8.8  
01_05_0263 + 20149610-20150125,20151056-20151496,20151745-20152047     27   8.8  

>07_01_0052 - 411927-412589
          Length = 220

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
 Frame = +1

Query: 31  DVENIGPVQYIPRRGFPSYYYPFTNKGGISKPTRCCTL*ET*NRGPHQ-HRVQSLGEEHL 207
           DV   GP +  PR G    +Y F++   ++ P     +      GP+    V  LG +H+
Sbjct: 94  DVLTEGPSRSSPRVGRTQGFYVFSD---MNVPALLFCMNVVLTAGPYAGSTVTILGRDHI 150

Query: 208 LRPLRETRLSPLRADGGPRLSTQLAGHVAH*VTPWPYLAESL 333
            +PLRE  LS +   G  R++T   G+V      W + A+++
Sbjct: 151 TQPLRE--LSVVGGTGAFRMAT---GYVLWRTASWQFRADAV 187


>04_01_0539 -
           6986728-6986996,6987807-6988284,6988580-6988594,
           6990029-6990043,6990279-6990875
          Length = 457

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -2

Query: 162 PVLGFSKSTATSGLRYPSLVGERVVVGREPASGD 61
           P+L F +  A  GLR P+LV  R V+ R P  GD
Sbjct: 28  PMLQFGRRLAYHGLR-PTLVATRYVLSRSPPPGD 60


>01_06_0887 + 32733300-32734565
          Length = 421

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +3

Query: 45  RPSPVHPPTRVPFLLLPVHQQ 107
           R  P+HPP ++P+L+LP+ +Q
Sbjct: 44  RLPPLHPPPKLPYLILPLAEQ 64


>04_04_1468 +
           33811471-33811657,33811888-33811980,33812899-33813027,
           33813089-33813166,33813377-33813435,33813522-33813644,
           33814225-33814282,33814383-33814468,33814564-33814635
          Length = 294

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 175 HRVQSLGEEHLLRPLRETRLSPLRADGGPRLS 270
           H V+ +G EHLLR +++T +S L  +   +L+
Sbjct: 157 HEVEEIGVEHLLRDVKDTTISTLATEVTSKLA 188


>02_04_0376 - 22474473-22476947
          Length = 824

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 32  TWRTSAQSSTSPDAGSLPTTTRSPTREGYLSPLVAVLFEKPRTGVLIN 175
           TW     S  +PD  +  T+ R+   EG L+    VL E  + GV ++
Sbjct: 535 TWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVD 582


>04_04_1267 -
           32257035-32257337,32257423-32257570,32257656-32257893,
           32257994-32258351,32258791-32258969,32259071-32259175,
           32259539-32260871
          Length = 887

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -2

Query: 186 LHSMLMRTPVLGFSKSTATSGLRYPSLVGE-RVVVGREPASGDVLDW 49
           LHSML    +L F K        Y  + G  R +V  +PAS   LDW
Sbjct: 622 LHSMLTDREILLFLKKYLKIPKFYTKIFGTLRYLVSEDPASKYALDW 668


>10_08_0421 + 17793875-17794536,17794558-17795515,17795689-17796243
          Length = 724

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 155 RTGVLINIECKAWAKNIFYDRYERRGSVHFELMVDR 262
           RT   +++ CKAW   +  DR+ R  +VH  +   R
Sbjct: 410 RTVSELSVVCKAWRAMVTTDRFIRSHAVHANMAARR 445


>01_05_0263 + 20149610-20150125,20151056-20151496,20151745-20152047
          Length = 419

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/60 (30%), Positives = 25/60 (41%)
 Frame = +1

Query: 166 PHQHRVQSLGEEHLLRPLRETRLSPLRADGGPRLSTQLAGHVAH*VTPWPYLAESLYLGH 345
           P   R+  +G  HL+  L    L  L    GP L     G V + V   P+ AE++   H
Sbjct: 54  PSPPRLPIIGHLHLIGDLPHVSLRELAHRYGPNLMLLHLGQVQNLVVSSPHAAEAVLRTH 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,561,675
Number of Sequences: 37544
Number of extensions: 341100
Number of successful extensions: 976
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)