Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0838
         (610 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52020| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.55 
SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_42042| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_33703| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_6365| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.9  
SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3)              28   5.1  
SB_35163| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_52020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +2

Query: 5   YPVKARTLL--TWRTSAQSSTSPDAGSLPTTTRSPTREGYLSPLVAVLFEKPRTGVLINI 178
           Y +K R+ L  T++ ++ S  +    +L T    PT   Y+ P V +LF+K R  V  + 
Sbjct: 72  YLIKDRSFLINTYKKTSTSYDTSKQNALKTVKDRPTN-AYIRPRVDLLFDKRRNSVKRDA 130

Query: 179 ECKAW 193
              AW
Sbjct: 131 PFSAW 135


>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 20/53 (37%), Positives = 25/53 (47%)
 Frame = +2

Query: 20  RTLLTWRTSAQSSTSPDAGSLPTTTRSPTREGYLSPLVAVLFEKPRTGVLINI 178
           RT  T  TSA S+++P  GS  TT+   T     S   A     PRTG  I +
Sbjct: 88  RTGSTTTTSAPSTSTPRTGSTTTTSAPSTSTTSNSTTRAPSTSTPRTGSTITL 140


>SB_42042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 863

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 252 WWTALKHTACWPRSS-LSDPVAIPSRVTLLRSFSVKVIN 365
           W T  ++   WP  S  + P + PSRVT+L   ++ +IN
Sbjct: 654 WSTPSRYNTPWPTPSRYNTPWSTPSRVTVLDVCAIHIIN 692


>SB_33703| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 745

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +1

Query: 1   WVSCEGENPADVENIGPVQYIPRRGFPSYYYPFTNKG 111
           WVSC G   AD ++     Y     FPSYY+PF   G
Sbjct: 15  WVSC-GIKMADDKDTRSA-YKQSNEFPSYYFPFYRDG 49


>SB_6365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1017

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 26  LLTWRTSAQSSTSPDAGSLPTTTRSPTREGYLSPLVA 136
           L +  TSA ++T+P   + PTTT+ PT +   S   A
Sbjct: 773 LASTSTSAATTTAPPTTAPPTTTKEPTTDASTSTSAA 809


>SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3)
          Length = 531

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 23  TLLTWRTSAQSSTSPDAGSLPTTTRSPT 106
           T LT  T+  ++T+P   + PTTT +PT
Sbjct: 34  TALTTTTAPTTTTAPTTTTAPTTTTAPT 61


>SB_35163| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 929

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 194 AKNIFYDRYERRGSVHFELMVD 259
           AKN F+D  ER GS H +  VD
Sbjct: 706 AKNRFFDGLERLGSAHRDAQVD 727


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,242,998
Number of Sequences: 59808
Number of extensions: 402931
Number of successful extensions: 1129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)