Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0838
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81037-5|CAB02752.1|  320|Caenorhabditis elegans Hypothetical pr...    44   9e-05
Z81550-4|CAB04477.1|  317|Caenorhabditis elegans Hypothetical pr...    41   8e-04
Z82262-6|CAB05149.1|  374|Caenorhabditis elegans Hypothetical pr...    34   0.069
AF040643-2|AAB94961.1|  471|Caenorhabditis elegans Hypothetical ...    30   1.5  
U97012-4|AAK39148.1|  340|Caenorhabditis elegans Serpentine rece...    28   6.0  
Z75548-1|CAA99911.1|  776|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z68006-5|CAE17869.1|   97|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U39996-6|AAA81092.1|  595|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>Z81037-5|CAB02752.1|  320|Caenorhabditis elegans Hypothetical
           protein C17E4.9 protein.
          Length = 320

 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 20/50 (40%), Positives = 31/50 (62%)
 Frame = +2

Query: 110 EGYLSPLVAVLFEKPRTGVLINIECKAWAKNIFYDRYERRGSVHFELMVD 259
           +GY  P+  V F+      L+ +EC+A+A NI +D   R G V+FE+MV+
Sbjct: 261 KGYQQPIAMVKFDTIPRNKLVIVECRAYALNIEHDISSRLGMVYFEVMVE 310



 Score = 38.7 bits (86), Expect = 0.003
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 4   VSCEGENPADVENIGPVQYIPRRGFPSYYYPFTNKGGISKP 126
           ++C G    D E+IG V Y+P  G    YYP+    G  +P
Sbjct: 226 INCRGATNVDQEHIGKVTYMPSNGIDGRYYPYVFTKGYQQP 266


>Z81550-4|CAB04477.1|  317|Caenorhabditis elegans Hypothetical
           protein F55F3.3 protein.
          Length = 317

 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 19/48 (39%), Positives = 28/48 (58%)
 Frame = +2

Query: 116 YLSPLVAVLFEKPRTGVLINIECKAWAKNIFYDRYERRGSVHFELMVD 259
           Y  P+  V F+      L+ +EC+A+A NI +D   R G V+FEL V+
Sbjct: 260 YQQPIAMVKFDTIPRNKLVIVECRAYASNIEHDISTRLGMVYFELFVE 307



 Score = 38.7 bits (86), Expect = 0.003
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +1

Query: 4   VSCEGENPADVENIGPVQYIPRRGFPSYYYPF 99
           ++CEG    D E++G V+YIP  G    YYP+
Sbjct: 223 INCEGATSFDKEHLGKVKYIPETGIDGRYYPY 254


>Z82262-6|CAB05149.1|  374|Caenorhabditis elegans Hypothetical
           protein C43F9.6 protein.
          Length = 374

 Score = 34.3 bits (75), Expect = 0.069
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 55  QYIPRRGFPSYYYPFTNKGGISKP 126
           +Y P+ G P+ Y+P+ N+GG  +P
Sbjct: 298 EYFPKTGIPTCYFPYANQGGYEQP 321


>AF040643-2|AAB94961.1|  471|Caenorhabditis elegans Hypothetical
           protein F14D2.7 protein.
          Length = 471

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = -3

Query: 572 NSGIXTHTYVMKHTSIHFSRTTGLICSNSKPLHSQFNIITYNDHDNNLQERH 417
           N+ +   T + K  + H ++ T    +N++ LH ++NII     DNN +E+H
Sbjct: 384 NNNVEAITEIQKDQAEH-AKDTNNNNNNNEHLHDEYNII--QTEDNNEEEKH 432


>U97012-4|AAK39148.1|  340|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 16 protein.
          Length = 340

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 119 LSPLVAVLFEKPRTGVLINIECKAWAKNIFYDR 217
           +SP++ ++F KP     +   CK   KN+  DR
Sbjct: 287 ISPIIYIVFIKPYREFFVRSFCKKCFKNVVQDR 319


>Z75548-1|CAA99911.1|  776|Caenorhabditis elegans Hypothetical
           protein R90.1 protein.
          Length = 776

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 20/73 (27%), Positives = 33/73 (45%)
 Frame = +2

Query: 5   YPVKARTLLTWRTSAQSSTSPDAGSLPTTTRSPTREGYLSPLVAVLFEKPRTGVLINIEC 184
           +PV   +LL+   S  S+TSP  G+ P++  +P R   +        EK R+G+     C
Sbjct: 533 FPVPKASLLSTPRSMDSNTSP-GGNSPSSPMNP-RASPIQQRRLSRSEKDRSGIHRTASC 590

Query: 185 KAWAKNIFYDRYE 223
            A   N     ++
Sbjct: 591 GAPQSNSIISHFK 603


>Z68006-5|CAE17869.1|   97|Caenorhabditis elegans Hypothetical
           protein K09C8.7 protein.
          Length = 97

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 416 CDAPEGYCHGRCM 454
           C  PEGYC G+CM
Sbjct: 68  CMDPEGYCPGKCM 80


>U39996-6|AAA81092.1|  595|Caenorhabditis elegans Hypothetical
           protein C56E6.5 protein.
          Length = 595

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -1

Query: 274 VCLSAVHHQLEVD*AASLVAVVEDVLRPGFALDVDED 164
           +CLS+ H  LE+D   S ++ + DV+  G+A D  ED
Sbjct: 120 LCLSSTHTSLEIDHRISELSAMFDVI--GYAHDKLED 154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,764,588
Number of Sequences: 27780
Number of extensions: 280059
Number of successful extensions: 867
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)