Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0838
         (610 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory su...    31   0.79 
At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory su...    31   0.79 
At5g55660.1 68418.m06940 expressed protein similar to unknown pr...    30   1.0  
At5g67280.1 68418.m08483 leucine-rich repeat transmembrane prote...    28   5.6  
At5g22570.1 68418.m02636 WRKY family transcription factor contai...    27   7.4  
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex...    27   9.7  
At2g10836.1 68415.m01153 hypothetical protein                          27   9.7  

>At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory
           subunit 7, putative / 26S proteasome regulatory subunit
           S12, putative / MOV34 protein, putative contains
           similarity to 26s proteasome regulatory subunit s12
           (proteasome subunit p40) (mov34 protein) SP:P26516 from
           [Mus musculus]; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 308

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +1

Query: 175 HRVQSLGEEHLLRPLRETRLSPLRADGGPRLSTQLAG 285
           H V+ +G EHLLR +++T +S L  +   +L T L G
Sbjct: 173 HEVEEIGVEHLLRDVKDTTISTLATEVTAKL-TALKG 208


>At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory
           subunit 7, putative / 26S proteasome regulatory subunit
           S12, putative / MOV34 protein, putative contains
           similarity to 26S proteasome regulatory subunit S12
           (MOV34) SP:P26516 from [Mus musculus]
          Length = 310

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +1

Query: 175 HRVQSLGEEHLLRPLRETRLSPLRADGGPRLSTQLAG 285
           H V+ +G EHLLR +++T +S L  +   +L T L G
Sbjct: 173 HEVEEIGVEHLLRDVKDTTISTLATEVTAKL-TALKG 208


>At5g55660.1 68418.m06940 expressed protein similar to unknown
           protein (pir||T08929)
          Length = 778

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +2

Query: 38  RTSAQSSTSPDAGSLPTTTRSPTREGYLSPLVAVLFEKPRTG 163
           ++   S TSP A S    T  P +E   +PL +V  EKP  G
Sbjct: 632 KSDDDSDTSPKASSKRKKTEKPAKEQAAAPLKSVSKEKPVIG 673


>At5g67280.1 68418.m08483 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 751

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 406 HTTTFSSPGANLIQFMTLTLNDLSKVTRLGMATGSLN 296
           H T  S P +NL   +   L  L+ + RL ++  S+N
Sbjct: 77  HVTVLSLPSSNLTGTLPSNLGSLNSLQRLDLSNNSIN 113


>At5g22570.1 68418.m02636 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 289

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 166 PHQHRVQSLGEEHLLRPLRETRLSPLRADGGPRLSTQLA 282
           PH+  VQ++   H      + RL+   ADGGP  S  LA
Sbjct: 6   PHEKAVQAIRYGHSCAMRLKRRLNHPMADGGPLSSYDLA 44


>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 699

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 45  RPSPVHPPTRVPFLLLPVHQ 104
           +PSPVH PT VP    PVH+
Sbjct: 421 KPSPVHKPTPVP--TTPVHK 438


>At2g10836.1 68415.m01153 hypothetical protein
          Length = 282

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -1

Query: 232 AASLVAVVEDVLRPGFALDVDEDP-GSRFLK-EYSNEW 125
           A  +V  VE++ RP F   V E+P  S+FL+ E  N W
Sbjct: 146 AYGVVVRVENITRPDFVPQVSENPILSQFLEFEIKNTW 183


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,032,721
Number of Sequences: 28952
Number of extensions: 261818
Number of successful extensions: 712
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)