Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0837
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 30 0.28
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 0.48
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase... 29 0.85
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 28 1.5
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch... 27 2.0
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 4.5
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 30.3 bits (65), Expect = 0.28
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = -3
Query: 590 LXSSETLMXNLLPGSFSSDSQVTLPKLSTARYLSKCDLK*IMLSLAFPEAGSRVQI 423
L + + M +LPGSFS + LP L+ L+ I S F E G+++ +
Sbjct: 1136 LENGSSAMVEILPGSFSLKTPSWLPNLTLNLESKSTTLRTIYYSKDFDEKGNQITV 1191
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.5 bits (63), Expect = 0.48
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -1
Query: 688 SGVSREPXRCRSVCPSWSPGNSHARRYAAPSGRC 587
S V+ EP RC +VC P H + SG C
Sbjct: 329 SKVNTEPFRCENVCDELLPCGEHTCKKRCHSGLC 362
>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1448
Score = 28.7 bits (61), Expect = 0.85
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Frame = +1
Query: 424 IWTLEPASGNAND-----SMIYLRSHLDKYLAVDSFGNVTCES-EEKEPGSKXHISVSDD 585
+WTLEP G ++ S+ S+ D + VDSF VT ++PG + + +D
Sbjct: 1072 VWTLEPMDGRSSQFYEILSLNKKNSYKDPQVIVDSFEGVTLNPVMRRKPGFESADIMDED 1131
Query: 586 XS 591
S
Sbjct: 1132 LS 1133
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = +2
Query: 227 TSSSVKRSQ*TDTAMATSTALETSSPRTS 313
TSSSV S TA+ +STAL TS+P TS
Sbjct: 697 TSSSVLNSS---TAITSSTALNTSTPITS 722
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = +2
Query: 227 TSSSVKRSQ*TDTAMATSTALETSSPRTS 313
TSSSV S TA+ +STAL TS+P TS
Sbjct: 1009 TSSSVLNSS---TAITSSTALNTSTPITS 1034
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = +2
Query: 227 TSSSVKRSQ*TDTAMATSTALETSSPRTS 313
TSSSV S TA+ +STAL TS+P TS
Sbjct: 3313 TSSSVLNSS---TAITSSTALNTSTPITS 3338
Score = 26.6 bits (56), Expect = 3.4
Identities = 18/34 (52%), Positives = 21/34 (61%)
Frame = +2
Query: 212 SSAV*TSSSVKRSQ*TDTAMATSTALETSSPRTS 313
SS TSSSV S T + +STAL TS+P TS
Sbjct: 608 SSTPITSSSVLNSS---TPITSSTALNTSTPITS 638
Score = 26.6 bits (56), Expect = 3.4
Identities = 18/34 (52%), Positives = 21/34 (61%)
Frame = +2
Query: 212 SSAV*TSSSVKRSQ*TDTAMATSTALETSSPRTS 313
SS TSSSV S T + +STAL TS+P TS
Sbjct: 644 SSTPITSSSVLNSS---TPITSSTALNTSTPITS 674
Score = 26.6 bits (56), Expect = 3.4
Identities = 18/34 (52%), Positives = 21/34 (61%)
Frame = +2
Query: 212 SSAV*TSSSVKRSQ*TDTAMATSTALETSSPRTS 313
SS TSSSV S T + +STAL TS+P TS
Sbjct: 848 SSTPITSSSVLNSS---TPITSSTALNTSTPITS 878
Score = 26.6 bits (56), Expect = 3.4
Identities = 18/34 (52%), Positives = 21/34 (61%)
Frame = +2
Query: 212 SSAV*TSSSVKRSQ*TDTAMATSTALETSSPRTS 313
SS TSSSV S T + +STAL TS+P TS
Sbjct: 1952 SSTPITSSSVLNSS---TPITSSTALNTSTPITS 1982
Score = 26.6 bits (56), Expect = 3.4
Identities = 18/34 (52%), Positives = 21/34 (61%)
Frame = +2
Query: 212 SSAV*TSSSVKRSQ*TDTAMATSTALETSSPRTS 313
SS TSSSV S T + +STAL TS+P TS
Sbjct: 2144 SSTPITSSSVLNSS---TPITSSTALNTSTPITS 2174
Score = 26.6 bits (56), Expect = 3.4
Identities = 18/34 (52%), Positives = 21/34 (61%)
Frame = +2
Query: 212 SSAV*TSSSVKRSQ*TDTAMATSTALETSSPRTS 313
SS TSSSV S T + +STAL TS+P TS
Sbjct: 2456 SSTPITSSSVLNSS---TPITSSTALNTSTPITS 2486
Score = 26.6 bits (56), Expect = 3.4
Identities = 18/34 (52%), Positives = 21/34 (61%)
Frame = +2
Query: 212 SSAV*TSSSVKRSQ*TDTAMATSTALETSSPRTS 313
SS TSSSV S T + +STAL TS+P TS
Sbjct: 2828 SSTPITSSSVLNSS---TPITSSTALNTSTPITS 2858
Score = 26.6 bits (56), Expect = 3.4
Identities = 18/34 (52%), Positives = 21/34 (61%)
Frame = +2
Query: 212 SSAV*TSSSVKRSQ*TDTAMATSTALETSSPRTS 313
SS TSSSV S T + +STAL TS+P TS
Sbjct: 3056 SSTPITSSSVLNSS---TPITSSTALNTSTPITS 3086
Score = 25.8 bits (54), Expect = 6.0
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2
Query: 227 TSSSVKRSQ*TDTAMATSTALETSSPRTS 313
TSSSV S T + +STAL TS+P TS
Sbjct: 673 TSSSVLNSS---TPITSSTALNTSTPITS 698
Score = 25.8 bits (54), Expect = 6.0
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2
Query: 227 TSSSVKRSQ*TDTAMATSTALETSSPRTS 313
TSSSV S T + +STAL TS+P TS
Sbjct: 721 TSSSVLNSS---TPITSSTALNTSTPITS 746
Score = 25.8 bits (54), Expect = 6.0
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +2
Query: 212 SSAV*TSSSVKRSQ*TDTAMATSTALETSSPRTS 313
SS TSS+V T T + +STAL TS+P TS
Sbjct: 1112 SSTPITSSTVVN---TSTPITSSTALNTSTPITS 1142
Score = 25.8 bits (54), Expect = 6.0
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2
Query: 227 TSSSVKRSQ*TDTAMATSTALETSSPRTS 313
TSSSV S T + +STAL TS+P TS
Sbjct: 1573 TSSSVVNSS---TPITSSTALNTSTPITS 1598
Score = 25.8 bits (54), Expect = 6.0
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2
Query: 227 TSSSVKRSQ*TDTAMATSTALETSSPRTS 313
TSSSV S T + +STAL TS+P TS
Sbjct: 1597 TSSSVLNSS---TPITSSTALNTSTPITS 1622
Score = 25.8 bits (54), Expect = 6.0
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2
Query: 227 TSSSVKRSQ*TDTAMATSTALETSSPRTS 313
TSSSV S T + +STAL TS+P TS
Sbjct: 1765 TSSSVLNSS---TPITSSTALNTSTPITS 1790
Score = 25.8 bits (54), Expect = 6.0
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2
Query: 227 TSSSVKRSQ*TDTAMATSTALETSSPRTS 313
TSSSV S T + +STAL TS+P TS
Sbjct: 1789 TSSSVLNSS---TPITSSTALNTSTPITS 1814
Score = 25.8 bits (54), Expect = 6.0
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2
Query: 227 TSSSVKRSQ*TDTAMATSTALETSSPRTS 313
TSSSV S T + +STAL TS+P TS
Sbjct: 1861 TSSSVLNSS---TPITSSTALNTSTPITS 1886
Score = 25.8 bits (54), Expect = 6.0
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +2
Query: 227 TSSSVKRSQ*TDTAMATSTALETSSPRTS 313
TSSSV S T + +STAL TS+P TS
Sbjct: 2053 TSSSVLNSS---TPITSSTALNTSTPITS 2078
Score = 25.8 bits (54), Expect = 6.0
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +2
Query: 212 SSAV*TSSSVKRSQ*TDTAMATSTALETSSPRTS 313
SS TSS+V T T + +STAL TS+P TS
Sbjct: 2756 SSTPITSSTVVN---TSTPITSSTALNTSTPITS 2786
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +2
Query: 212 SSAV*TSSSVKRSQ*TDTAMATSTALETSSPRTS 313
SS TSS+V S T + +STAL TS+P TS
Sbjct: 428 SSTPITSSTVLNSS---TPITSSTALNTSTPITS 458
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +2
Query: 212 SSAV*TSSSVKRSQ*TDTAMATSTALETSSPRTS 313
SS TSS+V S T + +STAL TS+P TS
Sbjct: 956 SSTPITSSTVLNSS---TPITSSTALNTSTPITS 986
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +2
Query: 212 SSAV*TSSSVKRSQ*TDTAMATSTALETSSPRTS 313
SS TSS+V S T + +STAL TS+P TS
Sbjct: 1736 SSTPITSSTVVNSS---TPITSSTALNTSTPITS 1766
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +2
Query: 212 SSAV*TSSSVKRSQ*TDTAMATSTALETSSPRTS 313
SS TSS+V S T + +STAL TS+P TS
Sbjct: 1892 SSTPITSSTVLNSS---TPITSSTALNTSTPITS 1922
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +2
Query: 212 SSAV*TSSSVKRSQ*TDTAMATSTALETSSPRTS 313
SS TSS+V S T + +STAL TS+P TS
Sbjct: 2084 SSTPITSSTVLNSS---TPITSSTALNTSTPITS 2114
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +2
Query: 212 SSAV*TSSSVKRSQ*TDTAMATSTALETSSPRTS 313
SS TSS+V S T + +STAL TS+P TS
Sbjct: 3368 SSTPITSSTVVNSS---TPITSSTALNTSTPITS 3398
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +2
Query: 212 SSAV*TSSSVKRSQ*TDTAMATSTALETSSPRTS 313
SS TSS+V S T + +STAL TS+P TS
Sbjct: 3404 SSTPITSSTVVNSS---TPITSSTALNTSTPITS 3434
>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 548
Score = 27.5 bits (58), Expect = 2.0
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +1
Query: 385 KINANGTSLKKKQIWTLEPASGNANDSMIYLRS---HLDKYLAVDSFGNVTCESEE 543
+I A G K P + + S+++LR HL VDSFGNV C + E
Sbjct: 27 RIRARGPDFFGKHKLNSGPWNLHFESSVLHLRGPSDHLTPQPHVDSFGNVLCWNGE 82
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 209 ISSAV*TSSSVKRSQ*TDTAMATSTALETSSPRT 310
+S+A+ +SS+V R +A +STA TS+P T
Sbjct: 1077 VSTALPSSSAVSRPPIATSAGRSSTAASTSAPLT 1110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,552,487
Number of Sequences: 5004
Number of extensions: 48139
Number of successful extensions: 161
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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