Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0837
(700 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57025| Best HMM Match : Fascin (HMM E-Value=0) 116 2e-26
SB_58680| Best HMM Match : Sas10_Utp3 (HMM E-Value=0.13) 29 2.7
SB_59186| Best HMM Match : rve (HMM E-Value=0.00029) 28 6.3
SB_42397| Best HMM Match : rve (HMM E-Value=0.0007) 28 6.3
SB_1237| Best HMM Match : rve (HMM E-Value=0.00029) 28 6.3
SB_50779| Best HMM Match : DUF885 (HMM E-Value=1.4e-17) 28 8.4
SB_53663| Best HMM Match : Peptidase_M10 (HMM E-Value=0) 28 8.4
SB_43150| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_20476| Best HMM Match : AT_hook (HMM E-Value=0.014) 28 8.4
>SB_57025| Best HMM Match : Fascin (HMM E-Value=0)
Length = 504
Score = 116 bits (279), Expect = 2e-26
Identities = 56/117 (47%), Positives = 78/117 (66%), Gaps = 1/117 (0%)
Frame = +1
Query: 325 WTIGLINSRY-RYLTAETFGFKINANGTSLKKKQIWTLEPASGNANDSMIYLRSHLDKYL 501
W IGL+N +YLTAETFGFK+N++G SL+KKQ W+LE G A IYL+SHL +YL
Sbjct: 247 WNIGLMNDNSSKYLTAETFGFKLNSDGVSLRKKQTWSLEQVDGEA----IYLKSHLGRYL 302
Query: 502 AVDSFGNVTCESEEKEPGSKXHISVSDDXSGRWALRNVERGYFLGSSSDKLTCTXXV 672
D GN+ CE+EE+E +K + + D G+WAL++V YF G++ D+L C +
Sbjct: 303 TADPKGNLCCEAEERESNAKFTVEIKD---GKWALKSVHGAYF-GANGDQLKCVAKI 355
>SB_58680| Best HMM Match : Sas10_Utp3 (HMM E-Value=0.13)
Length = 660
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 202 RLHFFCGVNQLECEKITMNGHSNGDINSAGDILTQNQQ 315
R H G+ LE E++T GHS GD+ D+ +++
Sbjct: 94 RHHAKAGIYNLEEEELTHLGHSLGDVGKFDDVRLSDEE 131
>SB_59186| Best HMM Match : rve (HMM E-Value=0.00029)
Length = 346
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/76 (25%), Positives = 35/76 (46%)
Frame = -3
Query: 557 LPGSFSSDSQVTLPKLSTARYLSKCDLK*IMLSLAFPEAGSRVQICFFFRLVPLALILKP 378
+P SSD +T +L D+K + S++FP++ R ++ + A L+
Sbjct: 154 VPEELSSDGGPEFTAKATEDFLRTWDVKQRLSSVSFPQSNGRAEVAEAWAAKEDA--LRT 211
Query: 377 KVSAVR*RYREFIRPM 330
++S RE RP+
Sbjct: 212 RISRTTESLREHARPL 227
>SB_42397| Best HMM Match : rve (HMM E-Value=0.0007)
Length = 729
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/76 (25%), Positives = 35/76 (46%)
Frame = -3
Query: 557 LPGSFSSDSQVTLPKLSTARYLSKCDLK*IMLSLAFPEAGSRVQICFFFRLVPLALILKP 378
+P SSD +T +L D+K + S++FP++ R ++ + A L+
Sbjct: 600 VPEELSSDGGPEFTAKATEDFLRTWDVKQRLSSVSFPQSNGRAEVAEAWAAKEDA--LRT 657
Query: 377 KVSAVR*RYREFIRPM 330
++S RE RP+
Sbjct: 658 RISRTTESLREHARPL 673
>SB_1237| Best HMM Match : rve (HMM E-Value=0.00029)
Length = 1026
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/76 (25%), Positives = 35/76 (46%)
Frame = -3
Query: 557 LPGSFSSDSQVTLPKLSTARYLSKCDLK*IMLSLAFPEAGSRVQICFFFRLVPLALILKP 378
+P SSD +T +L D+K + S++FP++ R ++ + A L+
Sbjct: 834 VPEELSSDGGPEFTAKATEDFLRTWDVKQRLSSVSFPQSNGRAEVAEAWAAKEDA--LRT 891
Query: 377 KVSAVR*RYREFIRPM 330
++S RE RP+
Sbjct: 892 RISRTTESLREHARPL 907
>SB_50779| Best HMM Match : DUF885 (HMM E-Value=1.4e-17)
Length = 815
Score = 27.9 bits (59), Expect = 8.4
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = -3
Query: 524 TLPKLSTARYLSKCDLK*IMLSLAFPEAGSRVQICFFFRLVPLALILKPKVSA--VR*RY 351
T+P+ ST + CD S+ + +VQ ++ RL P + LKPKV+A VR +Y
Sbjct: 78 TVPQKSTRDHF--CDYSVAAESIDLEKLLQKVQDAYY-RLHPHLIYLKPKVTAKEVRTKY 134
Query: 350 REF 342
+ +
Sbjct: 135 KAY 137
>SB_53663| Best HMM Match : Peptidase_M10 (HMM E-Value=0)
Length = 684
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 481 SHLDKYLAVDSFGNVTCESEEKEPGSKXHISVSDD 585
+HLDK D G T E++EKE G++ DD
Sbjct: 646 AHLDKESRQDKAGLTTVEAKEKEYGAEEKPKNDDD 680
>SB_43150| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 616
Score = 27.9 bits (59), Expect = 8.4
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 3/115 (2%)
Frame = +1
Query: 286 AGDILTQNQQKGWWTIGLINSRYRYLTAETFGFKINANGTSLKKKQIWTLEPASGNANDS 465
A +++T +K + T G S+Y+ +T E KI NGT + LE ND+
Sbjct: 329 ATEVVTVYMEKLYQTFG---SKYKLITIENVEKKIFENGTR------YLLEL---TLNDT 376
Query: 466 MIYLRSHLDKYLAVDSFGNVTCESEEKEPGSKXHISVSDDXSGRWA---LRNVER 621
+ HL Y+ + + C E + K ++V + G W L N+ R
Sbjct: 377 VANSEVHLSNYVYQPTNSSELCSPESSQWDRKAIVTVKN--QGPWVHLFLENIAR 429
>SB_20476| Best HMM Match : AT_hook (HMM E-Value=0.014)
Length = 475
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2
Query: 191 SRSRDCISSAV*TSSSVKRSQ*TDTAMATSTALETSSPRTSRKDGGP 331
SR IS++V + +K+S+ MAT T+SP ++ GGP
Sbjct: 223 SREAPPISTSVEDAEMLKKSRNLPAWMATGGQATTASPPVTKPVGGP 269
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,487,764
Number of Sequences: 59808
Number of extensions: 376127
Number of successful extensions: 1036
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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