Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0837
         (700 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071759-1|AAL49381.1|  564|Drosophila melanogaster RH62992p pro...   212   4e-55
AE014298-1101|AAN09225.2|  564|Drosophila melanogaster CG32858-P...   212   4e-55
X17549-1|CAA35585.1|  512|Drosophila melanogaster singed protein.     210   2e-54
AE014298-1103|AAN09224.1|  512|Drosophila melanogaster CG32858-P...   210   2e-54
AE014298-1102|AAF46307.1|  512|Drosophila melanogaster CG32858-P...   210   2e-54
AE014134-2111|AAF53131.1|  378|Drosophila melanogaster CG16960-P...    29   6.1  

>AY071759-1|AAL49381.1|  564|Drosophila melanogaster RH62992p
           protein.
          Length = 564

 Score =  212 bits (517), Expect = 4e-55
 Identities = 94/143 (65%), Positives = 116/143 (81%)
 Frame = +1

Query: 250 TMNGHSNGDINSAGDILTQNQQKGWWTIGLINSRYRYLTAETFGFKINANGTSLKKKQIW 429
           TMNG      +S GDI++QNQQKGWWTIGLIN +++Y+TAETFGFK+NANG SLKKKQ+W
Sbjct: 52  TMNGQGCELGHSNGDIISQNQQKGWWTIGLINGQHKYMTAETFGFKLNANGASLKKKQLW 111

Query: 430 TLEPASGNANDSMIYLRSHLDKYLAVDSFGNVTCESEEKEPGSKXHISVSDDXSGRWALR 609
           TLEP+  N  +S+IYLRSHL+KYL+VD FGNV CES+E++ GS+  IS+S+D SGRWAL+
Sbjct: 112 TLEPS--NTGESIIYLRSHLNKYLSVDQFGNVLCESDERDAGSRFQISISEDGSGRWALK 169

Query: 610 NVERGYFLGSSSDKLTCTXXVPG 678
           N  RGYFLG + DKL CT   PG
Sbjct: 170 NESRGYFLGGTPDKLVCTAKTPG 192


>AE014298-1101|AAN09225.2|  564|Drosophila melanogaster CG32858-PC,
           isoform C protein.
          Length = 564

 Score =  212 bits (517), Expect = 4e-55
 Identities = 94/143 (65%), Positives = 116/143 (81%)
 Frame = +1

Query: 250 TMNGHSNGDINSAGDILTQNQQKGWWTIGLINSRYRYLTAETFGFKINANGTSLKKKQIW 429
           TMNG      +S GDI++QNQQKGWWTIGLIN +++Y+TAETFGFK+NANG SLKKKQ+W
Sbjct: 52  TMNGQGCELGHSNGDIISQNQQKGWWTIGLINGQHKYMTAETFGFKLNANGASLKKKQLW 111

Query: 430 TLEPASGNANDSMIYLRSHLDKYLAVDSFGNVTCESEEKEPGSKXHISVSDDXSGRWALR 609
           TLEP+  N  +S+IYLRSHL+KYL+VD FGNV CES+E++ GS+  IS+S+D SGRWAL+
Sbjct: 112 TLEPS--NTGESIIYLRSHLNKYLSVDQFGNVLCESDERDAGSRFQISISEDGSGRWALK 169

Query: 610 NVERGYFLGSSSDKLTCTXXVPG 678
           N  RGYFLG + DKL CT   PG
Sbjct: 170 NESRGYFLGGTPDKLVCTAKTPG 192


>X17549-1|CAA35585.1|  512|Drosophila melanogaster singed protein.
          Length = 512

 Score =  210 bits (512), Expect = 2e-54
 Identities = 93/142 (65%), Positives = 115/142 (80%)
 Frame = +1

Query: 253 MNGHSNGDINSAGDILTQNQQKGWWTIGLINSRYRYLTAETFGFKINANGTSLKKKQIWT 432
           MNG      +S GDI++QNQQKGWWTIGLIN +++Y+TAETFGFK+NANG SLKKKQ+WT
Sbjct: 1   MNGQGCELGHSNGDIISQNQQKGWWTIGLINGQHKYMTAETFGFKLNANGASLKKKQLWT 60

Query: 433 LEPASGNANDSMIYLRSHLDKYLAVDSFGNVTCESEEKEPGSKXHISVSDDXSGRWALRN 612
           LEP+  N  +S+IYLRSHL+KYL+VD FGNV CES+E++ GS+  IS+S+D SGRWAL+N
Sbjct: 61  LEPS--NTGESIIYLRSHLNKYLSVDQFGNVLCESDERDAGSRFQISISEDGSGRWALKN 118

Query: 613 VERGYFLGSSSDKLTCTXXVPG 678
             RGYFLG + DKL CT   PG
Sbjct: 119 ESRGYFLGGTPDKLVCTAKTPG 140


>AE014298-1103|AAN09224.1|  512|Drosophila melanogaster CG32858-PB,
           isoform B protein.
          Length = 512

 Score =  210 bits (512), Expect = 2e-54
 Identities = 93/142 (65%), Positives = 115/142 (80%)
 Frame = +1

Query: 253 MNGHSNGDINSAGDILTQNQQKGWWTIGLINSRYRYLTAETFGFKINANGTSLKKKQIWT 432
           MNG      +S GDI++QNQQKGWWTIGLIN +++Y+TAETFGFK+NANG SLKKKQ+WT
Sbjct: 1   MNGQGCELGHSNGDIISQNQQKGWWTIGLINGQHKYMTAETFGFKLNANGASLKKKQLWT 60

Query: 433 LEPASGNANDSMIYLRSHLDKYLAVDSFGNVTCESEEKEPGSKXHISVSDDXSGRWALRN 612
           LEP+  N  +S+IYLRSHL+KYL+VD FGNV CES+E++ GS+  IS+S+D SGRWAL+N
Sbjct: 61  LEPS--NTGESIIYLRSHLNKYLSVDQFGNVLCESDERDAGSRFQISISEDGSGRWALKN 118

Query: 613 VERGYFLGSSSDKLTCTXXVPG 678
             RGYFLG + DKL CT   PG
Sbjct: 119 ESRGYFLGGTPDKLVCTAKTPG 140


>AE014298-1102|AAF46307.1|  512|Drosophila melanogaster CG32858-PA,
           isoform A protein.
          Length = 512

 Score =  210 bits (512), Expect = 2e-54
 Identities = 93/142 (65%), Positives = 115/142 (80%)
 Frame = +1

Query: 253 MNGHSNGDINSAGDILTQNQQKGWWTIGLINSRYRYLTAETFGFKINANGTSLKKKQIWT 432
           MNG      +S GDI++QNQQKGWWTIGLIN +++Y+TAETFGFK+NANG SLKKKQ+WT
Sbjct: 1   MNGQGCELGHSNGDIISQNQQKGWWTIGLINGQHKYMTAETFGFKLNANGASLKKKQLWT 60

Query: 433 LEPASGNANDSMIYLRSHLDKYLAVDSFGNVTCESEEKEPGSKXHISVSDDXSGRWALRN 612
           LEP+  N  +S+IYLRSHL+KYL+VD FGNV CES+E++ GS+  IS+S+D SGRWAL+N
Sbjct: 61  LEPS--NTGESIIYLRSHLNKYLSVDQFGNVLCESDERDAGSRFQISISEDGSGRWALKN 118

Query: 613 VERGYFLGSSSDKLTCTXXVPG 678
             RGYFLG + DKL CT   PG
Sbjct: 119 ESRGYFLGGTPDKLVCTAKTPG 140


>AE014134-2111|AAF53131.1|  378|Drosophila melanogaster CG16960-PA
           protein.
          Length = 378

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 113 HLIVGIYRKLQLKKIAGLYCTGEFLKC 33
           HLI+G+Y+K Q++    L+ T E L C
Sbjct: 50  HLILGMYKKPQIQVFRSLHFTSECLFC 76


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,215,655
Number of Sequences: 53049
Number of extensions: 539904
Number of successful extensions: 1400
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1390
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)