Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0837
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53344-5|AAA96226.2|  442|Caenorhabditis elegans More of ms prot...    30   1.4  
AF013489-1|AAC47728.1|  442|Caenorhabditis elegans MOM-1 protein.      30   1.4  
AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z48809-9|CAA88749.1| 1270|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z48583-5|CAA88473.1| 1270|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>U53344-5|AAA96226.2|  442|Caenorhabditis elegans More of ms protein
           1 protein.
          Length = 442

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 526 SRYRSCRLLGTCPSVTSSRSCYHWHSRKQAR 434
           +RY  C     CP  ++S SC H HS K  R
Sbjct: 350 ARYSMCVAAKACPVRSNSLSCKHRHSNKTGR 380


>AF013489-1|AAC47728.1|  442|Caenorhabditis elegans MOM-1 protein.
          Length = 442

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 526 SRYRSCRLLGTCPSVTSSRSCYHWHSRKQAR 434
           +RY  C     CP  ++S SC H HS K  R
Sbjct: 350 ARYSMCVAAKACPVRSNSLSCKHRHSNKTGR 380


>AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical
            protein W05F2.7 protein.
          Length = 1424

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
 Frame = +1

Query: 265  SNGD-INSAGDILTQNQQ----KGWWTIGLINSRYRYLTAETFGFKINANGTS 408
            S GD +++A + LT N       G W  G +NS  R+LT  T+    N NGT+
Sbjct: 982  STGDFLSNAWNSLTSNNSTGGGNGTWISGALNSTGRFLT-NTWNLLGNCNGTA 1033


>Z48809-9|CAA88749.1| 1270|Caenorhabditis elegans Hypothetical
           protein T01E8.5 protein.
          Length = 1270

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 664 RCRSVCPSWSPGNSHARRYAAPSGR 590
           R RS   S SP  SH+RRY   +GR
Sbjct: 139 RKRSASNSRSPSRSHSRRYDRDNGR 163


>Z48583-5|CAA88473.1| 1270|Caenorhabditis elegans Hypothetical
           protein T01E8.5 protein.
          Length = 1270

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 664 RCRSVCPSWSPGNSHARRYAAPSGR 590
           R RS   S SP  SH+RRY   +GR
Sbjct: 139 RKRSASNSRSPSRSHSRRYDRDNGR 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,482,197
Number of Sequences: 27780
Number of extensions: 280282
Number of successful extensions: 749
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)