Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0837
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g17690.1 68415.m02048 F-box family protein contains F-box dom...    31   0.56 
At1g27100.1 68414.m03303 expressed protein  contains Pfam profil...    31   0.97 
At3g14980.1 68416.m01894 PHD finger transcription factor, putati...    28   5.2  
At5g47690.1 68418.m05887 expressed protein                             27   9.0  
At5g41940.1 68418.m05106 RabGAP/TBC domain-containing protein si...    27   9.0  
At3g30842.1 68416.m03968 ABC transporter protein, putative simil...    27   9.0  

>At2g17690.1 68415.m02048 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 421

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 448 GNANDSMIYLRSHLDKYLAVDSFGNVTCESEEKEP 552
           GN ND     ++H   ++  D+ GNV+C+  E++P
Sbjct: 296 GNGNDDFFAAQAHRFIHVLHDNLGNVSCKPFERDP 330


>At1g27100.1 68414.m03303 expressed protein  contains Pfam profile:
           PF04601 protein of unknown function (DUF569
          Length = 519

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = +1

Query: 331 IGLINSRYRYLTAETFGFKINANGTSLKKKQIWTLEPASGNANDSMIYLRSHLDKYLAVD 510
           I + NS  +YLTA+     +  N     K   WT+EP   + +  +I L+S   KYL   
Sbjct: 236 IRMRNSHNKYLTADDDEETVTQNRNGSTKNARWTVEPVRDSFH--VIRLKSCYGKYLTAS 293

Query: 511 S 513
           +
Sbjct: 294 N 294


>At3g14980.1 68416.m01894 PHD finger transcription factor, putative
           contains Pfam profile: PF00628 PHD-finger
          Length = 1189

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +1

Query: 490 DKYLAVDSFGNVTCESEEKEPGSKXHISVSDDXSGRWALRNVERGYFLGSSSDKLT 657
           D+ L  +   N  C S++    ++ H +  DD  G    RN  +G F  SS  K T
Sbjct: 525 DERLRNEKMNNSCCNSKKGRKKARKHYTQDDDLMGSTITRN--KGKFSRSSQKKKT 578


>At5g47690.1 68418.m05887 expressed protein
          Length = 1638

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
 Frame = +1

Query: 454  ANDSMIYLRSHLDKYLAVDSFG----------NVTCESEEKEPGSKXHISVSDDXSGRWA 603
            A++  ++L S +DK +++DS            +++    +K   SK  I+ SD     WA
Sbjct: 1265 ASEDELHLESDMDKNVSLDSHDENSDQEKMLESISPRKRKKSLSSKLKITESD-----WA 1319

Query: 604  LRNVERGYFLGSSSDKL 654
            L +VER    G    KL
Sbjct: 1320 LTDVERSRSAGGGDSKL 1336


>At5g41940.1 68418.m05106 RabGAP/TBC domain-containing protein
           similar to GTPase activating protein [Yarrowia
           lipolytica] GI:2370595; contains Pfam profile PF00566:
           TBC domain
          Length = 549

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
 Frame = +1

Query: 430 TLEPASGNANDSMIYLRSHLDKYLA---VDSFGNVTCESEEKEPGSKXHISVSD-DXSGR 597
           T E A+GN +DS     +    +LA   V+S   V  E E   P SK     +D D    
Sbjct: 231 TTEDAAGNDSDSTNPEETETSPFLANEEVESHNTVNQEKEISSPSSKPKSQAADEDFMST 290

Query: 598 W 600
           W
Sbjct: 291 W 291


>At3g30842.1 68416.m03968 ABC transporter protein, putative similar
           to pleiotropic drug resistance like protein [Nicotiana
           tabacum] GI:20522008, ABC1 protein [Nicotiana
           plumbaginifolia] GI:14331118; contains Pfam profile
           PF00005: ABC transporter
          Length = 1406

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = +1

Query: 292 DILTQNQQKGWWTIGLINSRYRYLTAETF--GFKINANGTSLKKK 420
           +IL++  Q+ +W    +   YRY+TA+ F  GFKI+  G +++ +
Sbjct: 429 EILSKKDQEQYWANPEL--PYRYVTAKKFEEGFKIHHFGRAMRSQ 471


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,551,067
Number of Sequences: 28952
Number of extensions: 253931
Number of successful extensions: 680
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)